GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.042
SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.074
SB_50841| Best HMM Match : SAB (HMM E-Value=1.3)                       29   0.39 
SB_25078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.52 
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   26   4.8  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 26   4.8  
SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           25   6.4  
SB_23866| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  

>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 44  PRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSK 81
           PR  +P P N+ +E ED PL  K KG   I L  K+ K
Sbjct: 265 PRRSSPVPENAPNEPEDTPLTTKRKGRFNIALYSKRRK 302


>SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 31.9 bits (69), Expect = 0.074
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 19  LRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNK 71
           L LL     I  +   T+  FK+Y   +R P  I+  S YED  + Y+ K NK
Sbjct: 216 LTLLSLALPISHSLPTTIYKFKKYFKNLRNPLVIHRPSFYED--MQYRFKRNK 266


>SB_50841| Best HMM Match : SAB (HMM E-Value=1.3)
          Length = 279

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 48  TPSPINSSSEYEDNPLNYKMKGNKTIDLPLKKSK 81
           +P P N+ +E ED PL  K KG   I L  K+ K
Sbjct: 215 SPVPENAPNEPEDTPLTTKRKGRFNIALYSKRRK 248


>SB_25078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 9  GVGLRYVNEDLRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEY 58
          GVGL +  E+      + D  + ++ + KVFKE  P+ R P    ++++Y
Sbjct: 45 GVGLPHEQEE-----DVPDYGKVFKESFKVFKEQGPKDRKPKKGRNANDY 89


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 11  GLRYVNEDLRLLCHIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGN 70
           G+      + +  H  DI+RA  A  + + ++V R R    +   +E +     YK + +
Sbjct: 361 GIHRSKNGMEVRYHSTDINRAMSAPQRAYMQHVQRFRREKSVQPETEPKFLTHGYKKRND 420


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 43  VPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDL 75
           VP  +     N S    D  L+ K K NKT+DL
Sbjct: 810 VPEKKCKMSANESEMQTDTALHSKGKDNKTLDL 842


>SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 1   MSSSELTLGVGLRYVNEDLRLLCHIKDIDRAYQATLKVFKEY 42
           MS   L  G  +RY   DL      KD    Y   LK  KE+
Sbjct: 302 MSDKNLFFGYNMRYSKMDLVQPSKPKDDTITYDVILKTLKEH 343


>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 9   GVGLRYVNEDLRLLCHIKDIDRAYQATLKVFKEYVP--RVRTP 49
           G G++   E LR L  ++DI RA + T+K  K Y P   +RTP
Sbjct: 191 GKGVQPKPEVLRAL--LEDILRAEKKTVKTEKRYTPLDLIRTP 231


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 34  ATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNKTIDLP 76
           AT  VF    P   TP P  S+S   +  +N     N T+ LP
Sbjct: 244 ATSVVFDSTTPNATTPVPSISASISPNVTINMTRGANSTMILP 286


>SB_23866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 51 PINSSSEYEDNPLNY-KMKGN 70
          P+NS++ ++D P N+ K +GN
Sbjct: 36 PVNSTARFQDEPRNHEKAEGN 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,017
Number of Sequences: 59808
Number of extensions: 103322
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 12
length of query: 82
length of database: 16,821,457
effective HSP length: 60
effective length of query: 22
effective length of database: 13,232,977
effective search space: 291125494
effective search space used: 291125494
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)