Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
(82 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80843-4|AAB37964.1| 470|Caenorhabditis elegans Hypothetical pr... 28 0.89
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 27 2.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 26 3.6
AL033514-23|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 25 6.3
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 25 6.3
AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical ... 25 6.3
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr... 25 8.3
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 25 8.3
AL023828-29|CAA19454.2| 483|Caenorhabditis elegans Hypothetical... 25 8.3
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 25 8.3
>U80843-4|AAB37964.1| 470|Caenorhabditis elegans Hypothetical
protein C32B5.9 protein.
Length = 470
Score = 27.9 bits (59), Expect = 0.89
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 TLGVGLRYVNE-DLRLLCHIKDIDRAYQATLKVFKEYVPRVR-TPSPINSSSEYEDNPLN 64
TL +G R + RL I+D++ + +K+F+E P + T P+N S + L
Sbjct: 277 TLSIGCRGILRIPSRLKFEIRDLELGSEDNIKLFEEIKPLLHLTSFPLNYFSLFNSYNLR 336
Query: 65 YK 66
Y+
Sbjct: 337 YE 338
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 47 RTPSPINSSSEYEDNPLNYKMKGNKTIDLPL 77
R SP++ +SEY +NP M G++++ P+
Sbjct: 171 RELSPLSVASEYCNNPQPASMYGHRSVQSPV 201
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 29 DRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMKGNK 71
D Y T+ K + TP P N++ E E +P GNK
Sbjct: 2225 DGTYHVTIAEAKPEMSGTLTPKPKNAAGECETSPKVTVNGGNK 2267
>AL033514-23|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 26 KDIDRAYQAT----LKVFKEYVPRVRTPSPINS 54
KD+DR ++ + L++ K+ VP +R +PI+S
Sbjct: 553 KDLDRLWEESKGLVLQILKKEVPEMRGMNPIDS 585
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 26 KDIDRAYQAT----LKVFKEYVPRVRTPSPINS 54
KD+DR ++ + L++ K+ VP +R +PI+S
Sbjct: 553 KDLDRLWEESKGLVLQILKKEVPEMRGMNPIDS 585
>AF100673-4|AAP13734.2| 438|Caenorhabditis elegans Hypothetical
protein Y66H1B.5 protein.
Length = 438
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 39 FKEYVPRVRTPSPINSSSEYEDN-----PLNYKMKGNKTIDLPLK 78
FK V + PS I S + N P+N+ + +KT DLP+K
Sbjct: 132 FKAVVDYKKDPSQITISGLDQPNYRLNQPINFVIDTSKTKDLPVK 176
>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical protein
F29D10.4 protein.
Length = 1100
Score = 24.6 bits (51), Expect = 8.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 47 RTPSPINSSSEYEDNPLNYKMKGN 70
+TP+P++++ +Y P + GN
Sbjct: 984 QTPAPVSTNHQYSQEPARIPVMGN 1007
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 24.6 bits (51), Expect = 8.3
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 47 RTPSPINSSSEYEDNPLNYKMKGN 70
+TP+P++++ +Y P + GN
Sbjct: 920 QTPAPVSTNHQYSQEPARIPVMGN 943
>AL023828-29|CAA19454.2| 483|Caenorhabditis elegans Hypothetical
protein Y17G7B.9 protein.
Length = 483
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 25 IKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMK 68
+KD+ + Y L+ KE V+ + + Y D + +K K
Sbjct: 319 LKDMQKEYMKALRPVKEKKKAVKDETLSEAMQSYHDLKMRFKSK 362
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 48 TPSPINSSSEYEDN-PLNYK 66
+PSP N+ S++ DN P +YK
Sbjct: 4436 SPSPCNTDSDFSDNTPDDYK 4455
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,916
Number of Sequences: 27539
Number of extensions: 76601
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 10
length of query: 82
length of database: 12,573,161
effective HSP length: 62
effective length of query: 20
effective length of database: 10,865,743
effective search space: 217314860
effective search space used: 217314860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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