GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000718-TA|BGIBMGA000718-PA|undefined
         (82 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   0.28 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   0.65 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   8.0  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 0.28
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 25 IKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMK 68
          I DID   + T K  K+ +   +T      ++EY + P + K+K
Sbjct: 26 ISDIDEFREMTSKYRKKCIGETKTTIEDVEATEYGEFPEDEKLK 69


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 0.65
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 24  HIKDIDRAYQATLKVFKEYVPRVRTPSPINSSSEYEDNPLNYKMK 68
           H++D         +  K   PR+R PS I  +   +   L+Y+ K
Sbjct: 92  HVRDFLNGLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSK 136


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 53 NSSSEYEDNPLNYKMKGNK 71
          +++SE E+N  +Y+M G K
Sbjct: 73 DTTSENEENYPHYQMSGAK 91


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 24  HIKDIDRAYQATLKVFKEYVPR 45
           H K I RA + T K+F   + R
Sbjct: 445 HFKQIARAVKFTSKLFGRALSR 466


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 48  TPSPINSSSEYEDNPLNYKMKGNK 71
           TP    +  EY +N L+ K   NK
Sbjct: 364 TPKFPRNIDEYNNNDLDTKKWNNK 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,816
Number of Sequences: 429
Number of extensions: 964
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 82
length of database: 140,377
effective HSP length: 47
effective length of query: 35
effective length of database: 120,214
effective search space:  4207490
effective search space used:  4207490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.6 bits)
S2: 37 (19.0 bits)