GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000717-TA|BGIBMGA000717-PA|IPR002181|Fibrinogen,
alpha/beta/gamma chain, C-terminal globular
         (497 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     31   0.024
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   1.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   3.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   4.9  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   4.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 30.7 bits (66), Expect = 0.024
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 14/151 (9%)

Query: 341 ISTLGT-YYGTAGDSLSYHAGQKFSTFDVDNDEWKDGSCAQEHGGAWWYKECDKSNLNGK 399
           IST G+ +  T  DSL  +AG++F  F V  D+ +D       G      +CD+      
Sbjct: 306 ISTDGSDFNATEVDSLVTYAGERFD-FIVTADQPQDVYWMHFRG----LMDCDE-RFTRA 359

Query: 400 YSTTTEENKGQSIYWISFKVPNYPLSKTK-MMIRPLPAKRPTD--FIDNSRKISDGSKKK 456
           Y     E KG    + S++ P Y  S+ +   + PL      D  F+   +  S      
Sbjct: 360 YQVAVLEYKGTQTNYPSYE-PTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLDEWDD 418

Query: 457 PLPEKQSRVKDMKTKYDV-KHNHPMYRYDEH 486
            L EK          YD  K NHP+Y  D H
Sbjct: 419 TLKEKADF--QYYVSYDFYKMNHPVYHKDPH 447


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 357 YHAGQKFSTFDVDNDEWKDGSCAQEHGGAWWYKECDKS 394
           Y  G ++    V   E+K  +C  E+G    ++ECDK+
Sbjct: 855 YVNGSEYHPSIVSLGEYKCVTCKCENGKPTCWRECDKA 892


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 392 DKSNLNGKYSTTTEENKGQSIYWISFKVPN 421
           D S   G Y+  T +  G+   W+ ++ P+
Sbjct: 356 DPSKRKGTYAFRTPDENGEGGAWVGYEDPD 385


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 243 PDDMDSFYVLCDLSTAGGGWTVFQNRFDGSQ 273
           PD    FYV  D S  G G  ++Q + DGS+
Sbjct: 595 PDLNKIFYVQTDSSGYGLGAELYQIQEDGSR 625


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 240 KIKPDDMDSFYVLCDLSTAGGGWTVFQNRFDGSQDFYK 277
           ++ PD + +    C      G  TV Q+ +   QD++K
Sbjct: 64  RVLPDALKTSCAKCTDKQKQGAKTVIQHLYKNKQDWWK 101


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,605
Number of Sequences: 317
Number of extensions: 5247
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 497
length of database: 114,650
effective HSP length: 60
effective length of query: 437
effective length of database: 95,630
effective search space: 41790310
effective search space used: 41790310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)