Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000717-TA|BGIBMGA000717-PA|IPR002181|Fibrinogen,
alpha/beta/gamma chain, C-terminal globular
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789 37 0.032
06_02_0105 - 11893666-11895483,11895661-11896422 32 0.91
07_03_1359 - 25985936-25986083,25986424-25986782,25987026-259871... 32 1.2
11_01_0227 + 1767191-1767847 31 2.1
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 31 2.1
03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870 31 2.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 30 3.7
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 29 6.4
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 29 6.4
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 29 8.5
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 29 8.5
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 29 8.5
>04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789
Length = 180
Score = 37.1 bits (82), Expect = 0.032
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 65 PQSPGIGDNEAVIEKLMETITSSEKYFKKVESIDFRLNRLDIEIHEKTNSIAKQLGEIMK 124
P S + D +IEK + + SEK K V ++D + RLD + K LG M
Sbjct: 77 PFSKMVRDTTDLIEKRLSNMGWSEKQHKPVNALDLLMKRLDNNEKDAKQGTIKALGSHMA 136
Query: 125 AV---NSDAYGDKFETILETIKSDVSQIKYSLQMTPR 158
N +G E +K+ Q + S PR
Sbjct: 137 CEVCGNDGHFGTNCPKTCENVKAHEQQQRVSSTRRPR 173
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 32.3 bits (70), Expect = 0.91
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 35 EDKTLWKEEYEKELTDAMLSSRRRDNVTRVPQSPGIGDNEAVIEKLMETITSSEKYFKKV 94
E + KE+Y L + ML V ++ I + + I K ++ SE +KV
Sbjct: 342 EKLNIIKEQYNAVLANLMLVKDESGKVQENYETLLI-ERDISIGKAQLAVSMSEGAVRKV 400
Query: 95 ESIDFRLNRLDIEI---HEKTNSIAKQLGEIMKAVNSDAYGDKFETILETIKSDVSQI 149
E + LNRL +E+ H + K + A + D+ K+++ L + +++Q+
Sbjct: 401 EELTVELNRLKVELELAHSTCHDAEKHSKDTSLACDEDSL--KWKSDLRQAEEELNQL 456
>07_03_1359 -
25985936-25986083,25986424-25986782,25987026-25987153,
25987609-25987727,25988253-25988320
Length = 273
Score = 31.9 bits (69), Expect = 1.2
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 143 KSDVSQIKYSLQMTPRSNNAGTEYQTDPSLDTKLSVLESNT---KSILSGVESILTVISE 199
KS+ ++K Q N G + D + K VL T K +LS VES+ S
Sbjct: 40 KSEREKLKRDKQ-NDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLSQVESLRKENSS 98
Query: 200 VKNRQYTKPLARSERVDRSERYPTDCFEIQ 229
+KN + L R+E D + T+ E+Q
Sbjct: 99 LKNESHYVALERNELHDDNSMLRTEILELQ 128
>11_01_0227 + 1767191-1767847
Length = 218
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 430 MIRPLPAKRPTDFIDNSRKISDGSKKKPLPEKQSRV 465
+IRP P+ PT I R+ +DG P K +RV
Sbjct: 106 VIRPRPSSMPTPVIGRRRRAADGDAPMQPPSKYARV 141
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 31.1 bits (67), Expect = 2.1
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 325 ASYSVFTVGPEEEGYRISTLGTYYGTAGDSLSYHAGQKFSTFDVDNDEWKDGSCAQEHGG 384
+SY EE GY + G Y G +GD G + + DN+ + E+G
Sbjct: 667 SSYRRSGADDEEGGYNKTNTGDY-GRSGDDYGRDTGLFNESGNDDNESGYKNTNTDEYGS 725
Query: 385 AWWYKECDKSNLNGKYSTT-TEENKGQSIY 413
Y + + +L G ++ + T++ G Y
Sbjct: 726 TGSYNKSNTDDLTGGFNKSGTDDYSGGGGY 755
>03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870
Length = 468
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 335 EEEGYRISTLGTYYGTAGDSLSYHAGQKFSTFDVDNDEWKDGSCAQE 381
E E ++ G YYGT + AG F+T + D W GS A E
Sbjct: 247 EHESKELNPWGIYYGTNYVATHRAAGVDFATIHLYPDVWLWGSTADE 293
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 30.3 bits (65), Expect = 3.7
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 40 WKEEYEKELTDAMLSSRRRDNVTRVPQSPGIGDNEAVIEK--LMETITSSEKYFKKVESI 97
W E + L ML++ + + + IG + K L ET SE+ KK +I
Sbjct: 1169 WDSEVKALLGLPMLATATPSGIVHLVEGVAIGALVQLHIKGFLRETFEESERLLKKERNI 1228
Query: 98 DFRLNRLDIEIHEKTNSIAKQLGEIMKAV 126
D +N + E+H++ SI ++ +++ +
Sbjct: 1229 DTGVN--ENELHQQLLSITEERDKLLSEI 1255
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 29.5 bits (63), Expect = 6.4
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 139 LETIKSDVSQIKYSLQMTPRS-NNAGTEYQTDPSLDTKLSV-LESNTKSILSGVESILTV 196
L + D++ K S Q + + G + P ++T L + L K + G E I
Sbjct: 178 LPGVTQDIAGYKISSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKY 237
Query: 197 ISEVKNRQYTKPLARSERVDRSERYPTDCFEIQMQGFNVSGIYKIKPDDMDSFYV 251
+ + N + T PL V R E++ D F + + S + +P++ D+ YV
Sbjct: 238 LLSLLNIRKT-PLHWERLVYRREQFNEDAFNSNEKDYRDSPRRRRRPNNSDALYV 291
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 29.5 bits (63), Expect = 6.4
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 75 AVIEKLMETITSSEKYFKKVESIDFRL----NRLDIEIHEKTNSIAKQLGEIMKAVNSDA 130
AV+EKL E + E +K+E++D +L RLD ++ K N A G+ + +
Sbjct: 10 AVVEKLAEKVEKVELIQEKLEAMDMKLEKQGERLD-QVQAKANR-ANNAGDSNQDNGGNL 67
Query: 131 YGDKFET---ILETIKSDVSQIKYSLQMTPRSNNAGTEYQT 168
+ DK T ++ S IK + + + EY++
Sbjct: 68 FYDKRTTSDAVVNEFDSGTHHIKANAMFELKQTGSVDEYKS 108
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.1 bits (62), Expect = 8.5
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 84 ITSSEKYFK-KVESIDFRLNRLDIEIHE-KTNSIAKQLGEIMKAVNSDAYGDKFETILET 141
+ S EK +V ++ RLN+L+IE+ K N K L E N D +F+ L T
Sbjct: 698 LESDEKILSSRVRVLENRLNKLEIELENLKNNCDIKALPE-----NKDIQNTEFKEQLIT 752
Query: 142 IKSDVSQIKYSLQMTPRSNNAGTEY 166
+K S +Q+ N G +Y
Sbjct: 753 LKD--SNTAKIIQLRDAITNFGNKY 775
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 432 RPLPAKRPTDFIDNSRKISDGSKKKPLPEKQSRVKDMKTKYDVK 475
RP P TDF D+ K+ PL + R K K D +
Sbjct: 447 RPHPTVYDTDFGDDGMKVDSRPHLSPLAKSSKRAKSSPPKLDTR 490
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 335 EEEGYRISTLGTYYGTAGDSLSYHAGQKFSTFDVDNDEWKDGSCAQEHGGAWWYKECDKS 394
E E ++ G YYGT + A F+T + D W GS A E A +++ +S
Sbjct: 218 EHESKELNPWGIYYGTNYVATHRTAAVDFATIHLYPDVWLWGSSADEQ--ATFFRNWTRS 275
Query: 395 NLN 397
+++
Sbjct: 276 HID 278
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,193
Number of Sequences: 37544
Number of extensions: 629275
Number of successful extensions: 1227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 15
length of query: 497
length of database: 14,793,348
effective HSP length: 85
effective length of query: 412
effective length of database: 11,602,108
effective search space: 4780068496
effective search space used: 4780068496
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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