Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000716-TA|BGIBMGA000716-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000536|Nuclear hormone receptor,
ligand-binding, IPR001723|Steroid hormone receptor, IPR000324|Vitamin
D receptor, IPR008946|Nuclear receptor, ligand-binding
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    37   0.039
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    33   0.64 
At4g17430.1 68417.m02609 expressed protein weak similarity to Ci...    31   1.5  
At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS cla...    30   4.5  
At2g33720.1 68415.m04133 expressed protein                             30   4.5  
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-...    29   7.8  

>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 36.7 bits (81), Expect = 0.039
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 97  LCPVCGDKVSGYHYGLLTCE-----SCKGFFKRTVQNKK-VYTCVAERACHIDKTQRKRC 150
           LC +CG+ ++G  +G L C+      C   F R + +K   +  +     HI  T+  +C
Sbjct: 197 LCHICGESIAGVPFGCLECDFDAHLRCLDSFLRGLMHKSHPHRLIYRTKSHISFTENDQC 256

Query: 151 PFCR 154
             CR
Sbjct: 257 QICR 260


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 492 TIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQA 527
           T++D + KL+  +PEI  L A  + HL +  C G A
Sbjct: 510 TVEDDYLKLLRSIPEIFPLPAVSDRHLIKELCLGHA 545


>At4g17430.1 68417.m02609 expressed protein weak similarity to CigA
           protein [Mucor circinelloides] GI:9717020
          Length = 507

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 175 GGRNKFGPMYKRDRARKLQMMRQRQIAVQTL-RGSLGDGGLVLGFGSPYTAVSVKQEIQI 233
           G  + F P  K  + +KL  +R+R+   +TL  G+  +   +L FGS +TA     E+ I
Sbjct: 249 GRLDSFQPDEKLKKKKKLSNVRRRRDVYKTLGHGTEAESAAILAFGSLFTAPYKGSELYI 308


>At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 499 KLVMVVPEIHALAARGEEHLYQRHCAGQAPTQT 531
           ++++V  + H L A G +H+Y+    G AP  T
Sbjct: 322 RIIVVTNDKHFLTAHGIDHIYETRLCGDAPFAT 354


>At2g33720.1 68415.m04133 expressed protein
          Length = 326

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 371 KYLKVDDQMKLLQDSWSVMLVLDHLHQRMHN 401
           +YL +DDQM + +DS   + V DH    +HN
Sbjct: 231 RYLPLDDQMMVKEDSGLAVEVYDHDTDSVHN 261


>At3g42790.1 68416.m04474 PHD finger family protein contains
           PHD-finger domain, INTERPRO:IPR001965
          Length = 250

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 86  DQTDTKDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKT 145
           D+ D  D  E LC  CGD   G     + C+ C+ +F     + K       RA HI   
Sbjct: 185 DEDDEDDHGETLCGACGDS-DGADEFWICCDLCEKWF-----HGKCVKITPARAEHI--- 235

Query: 146 QRKRCPFC 153
           ++ +CP C
Sbjct: 236 KQYKCPSC 243


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,050
Number of Sequences: 28952
Number of extensions: 438727
Number of successful extensions: 793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 7
length of query: 542
length of database: 12,070,560
effective HSP length: 85
effective length of query: 457
effective length of database: 9,609,640
effective search space: 4391605480
effective search space used: 4391605480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)