Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000716-TA|BGIBMGA000716-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000536|Nuclear hormone receptor,
ligand-binding, IPR001723|Steroid hormone receptor, IPR000324|Vitamin
D receptor, IPR008946|Nuclear receptor, ligand-binding
(542 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 114 2e-27
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 100 3e-23
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 89 7e-20
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 89 7e-20
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 77 3e-16
AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory recept... 24 3.1
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 23 7.1
EF222290-1|ABN79650.1| 378|Tribolium castaneum adipokinetic hor... 22 9.4
DQ422965-1|ABE02225.1| 378|Tribolium castaneum adipokinetic hor... 22 9.4
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 114 bits (274), Expect = 2e-27
Identities = 46/80 (57%), Positives = 59/80 (73%)
Query: 95 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCR 154
+ LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C E+ C IDK QR RC +CR
Sbjct: 83 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCR 142
Query: 155 FQKCLDVGMKLEAVRADRMR 174
+QKCL++GMK EAV+ +R R
Sbjct: 143 YQKCLNMGMKREAVQEERQR 162
Score = 104 bits (250), Expect = 1e-24
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 3/190 (1%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETT 408
+C+ + LF V WA+ F L + DQ++LL+ W+ +L+ H+ M D
Sbjct: 214 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ--AQDAIV 271
Query: 409 LHNGQKFDXXXXXXXXVPSLADH-FNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVN 467
L G + V ++ D +EL NK+ E+K D + C++ ++L NP+VRGI +
Sbjct: 272 LATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKS 331
Query: 468 VKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQA 527
V+ V + + L +YT T +P +F KL++ +P + ++ + EHL+ G
Sbjct: 332 VQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDV 391
Query: 528 PTQTLLMEML 537
P T LMEML
Sbjct: 392 PIDTFLMEML 401
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 100 bits (239), Expect = 3e-23
Identities = 41/74 (55%), Positives = 49/74 (66%)
Query: 95 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCR 154
EELC VCGD+ SGYHY LTCE CKGFF+R++ VY C C ID R++C CR
Sbjct: 185 EELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECR 244
Query: 155 FQKCLDVGMKLEAV 168
+KCL VGM+ E V
Sbjct: 245 LKKCLSVGMRPECV 258
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 89.0 bits (211), Expect = 7e-20
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 93 VIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVA--ERACHIDKTQRKRC 150
+++ C VCGD SG HY + C+ C GFFKR+++ + Y C A E +C IDKT R +C
Sbjct: 33 ILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92
Query: 151 PFCRFQKCLDVGMKLEAVRADRMRGGRN 178
CR +KC +VGM +AV+ + RG RN
Sbjct: 93 RACRLKKCQNVGMNKDAVQHE--RGPRN 118
Score = 37.5 bits (83), Expect = 2e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVL 392
+C+ Q LF V W R+ F L + DQ+ LL++SW + VL
Sbjct: 199 ICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVL 242
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 89.0 bits (211), Expect = 7e-20
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 93 VIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVA--ERACHIDKTQRKRC 150
+++ C VCGD SG HY + C+ C GFFKR+++ + Y C A E +C IDKT R +C
Sbjct: 33 ILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQC 92
Query: 151 PFCRFQKCLDVGMKLEAVRADRMRGGRN 178
CR +KC +VGM +AV+ + RG RN
Sbjct: 93 RACRLKKCQNVGMNKDAVQHE--RGPRN 118
Score = 42.3 bits (95), Expect = 8e-06
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 19/202 (9%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETT 408
+C+ Q +F V W R+ F L + DQ+ LL++SW + VL L D +
Sbjct: 199 ICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLG---AAQFLPLMDFSV 255
Query: 409 LHN--GQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLL-------- 458
L G + +AD F E K+++ + D ++ C++ ++L
Sbjct: 256 LVEACGVLQQEPHRRDAFLKEVAD-FQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPS 314
Query: 459 ---NPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPE-IHALAARG 514
N E + K + Q L + T YP +FGK++++V ++ R
Sbjct: 315 SSSNQEKTTTESAK-ISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRT 373
Query: 515 EEHLYQRHCAGQAPTQTLLMEM 536
E L+ + P ++ M
Sbjct: 374 IEDLFFKKVIRDTPIVAIISNM 395
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 77.0 bits (181), Expect = 3e-16
Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 94 IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN-KKVYTCVAERACHIDKTQRKRCPF 152
+ +LC VCG+ +G+H+G TCE CK FF RT N + C C I+K R C
Sbjct: 1 MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKA 60
Query: 153 CRFQKCLDVGMKLEAVRADR 172
CR +KCL VGM R R
Sbjct: 61 CRLRKCLLVGMSKSGSRYGR 80
>AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory receptor
candidate 27 protein.
Length = 346
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 373 LKVDDQMKLLQDSWSVMLVLDHLHQRMHN 401
L +D K++Q +WS L ++H +N
Sbjct: 318 LDLDTFKKIMQKAWSFFTALKNMHDIRNN 346
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
protein.
Length = 1156
Score = 22.6 bits (46), Expect = 7.1
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 67 PTGTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVC 101
PT G PGA L + D T D I + C C
Sbjct: 1026 PTNAGTTPGAILAFSWACNDAVMTSDSIMK-CAFC 1059
>EF222290-1|ABN79650.1| 378|Tribolium castaneum adipokinetic
hormone receptor protein.
Length = 378
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 458 LNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPT 492
+NP V G+ N++ R G + +C PT
Sbjct: 326 MNPVVYGVFNIRARRTGRKVSPRVNTIKHTSCIPT 360
>DQ422965-1|ABE02225.1| 378|Tribolium castaneum adipokinetic
hormone receptor protein.
Length = 378
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 458 LNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPT 492
+NP V G+ N++ R G + +C PT
Sbjct: 326 MNPVVYGVFNIRARRTGRKVSPRVNTIKHTSCIPT 360
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.323 0.137 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,547
Number of Sequences: 317
Number of extensions: 4630
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 15
length of query: 542
length of database: 114,650
effective HSP length: 60
effective length of query: 482
effective length of database: 95,630
effective search space: 46093660
effective search space used: 46093660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)
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