GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000716-TA|BGIBMGA000716-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000536|Nuclear hormone receptor,
ligand-binding, IPR001723|Steroid hormone receptor, IPR000324|Vitamin
D receptor, IPR008946|Nuclear receptor, ligand-binding
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935...    32   1.3  
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611...    30   5.4  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    29   9.4  

>09_06_0050 +
           20493063-20493137,20493253-20493347,20493450-20493547,
           20493684-20493842,20493944-20494055,20494185-20494728,
           20494818-20494915,20494990-20495229,20495312-20495426,
           20495528-20495732,20495805-20496373
          Length = 769

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 452 VKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTC-YPTIQDKFGKLV---MVVPEI 507
           V F   L  ++   +++ CV+  YQ V  A+L YT +   P  Q  F K +   +V PE+
Sbjct: 437 VIFAQFLTKDIASSLDIPCVQVDYQ-VGTAILAYTTSMRNPVAQFSFPKTIVGELVAPEV 495

Query: 508 HALAARGEEHL 518
              ++RG   L
Sbjct: 496 AYFSSRGPSSL 506


>05_02_0051 -
           6110320-6110375,6110554-6110696,6111011-6111124,
           6111586-6111685,6111768-6111850,6112003-6112087,
           6112773-6112828,6113569-6114056
          Length = 374

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 372 YLKVDDQMKLLQDSWSVMLVLDHLHQRMHNG 402
           Y+K DD + L  D  + +L  D LHQR + G
Sbjct: 226 YVKADDAIYLRPDRLAALLAKDRLHQRTYIG 256


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 39  YVPQGAAYQCPPEQQSFGYA-NLDASYLFPTGTGGEPGAYLPTAG 82
           Y   G  Y  PP       A N D++   P+  GG PG+Y P+ G
Sbjct: 311 YGGPGGDYAAPPSSYGGNNAYNSDSAVPPPSSYGGGPGSYPPSYG 355


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,575
Number of Sequences: 37544
Number of extensions: 551942
Number of successful extensions: 1005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 3
length of query: 542
length of database: 14,793,348
effective HSP length: 86
effective length of query: 456
effective length of database: 11,564,564
effective search space: 5273441184
effective search space used: 5273441184
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)