Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000716-TA|BGIBMGA000716-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000536|Nuclear hormone receptor,
ligand-binding, IPR001723|Steroid hormone receptor, IPR000324|Vitamin
D receptor, IPR008946|Nuclear receptor, ligand-binding
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 120 4e-27
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 7e-27
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 110 2e-24
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 106 4e-23
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 9e-23
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 100 6e-21
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 99 8e-21
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-20
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 98 2e-20
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 95 1e-19
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 91 2e-18
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 89 1e-17
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 87 3e-17
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 84 3e-16
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 4e-13
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 65 2e-10
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 2e-08
SB_56035| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22) 40 0.007
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.047
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.77
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 30 5.4
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 120 bits (288), Expect = 4e-27
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 91 KDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTC-VAERACHIDKTQRKR 149
+ V+ E+C +C DK +G HYG+ +CE CKGFFKR+VQNKK YTC + C IDK R R
Sbjct: 191 RPVVNEICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHRNR 250
Query: 150 CPFCRFQKCLDVGMKLEAVRADRMRGGRNK 179
C +CRFQKC+ GM EAVR DR GG++K
Sbjct: 251 CQYCRFQKCIQAGMIKEAVREDRTPGGKHK 280
Score = 83.0 bits (196), Expect = 6e-16
Identities = 44/194 (22%), Positives = 96/194 (49%), Gaps = 2/194 (1%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETT 408
+ ++ +Q L W ++ K + DQ L+ + W V L+L +L + N L ++
Sbjct: 362 LTQLAEQQLVRCASWFKHLKLLKGICELDQQTLVTNVW-VELMLANLIKESEN-LENKAK 419
Query: 409 LHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNV 468
L +GQ D + + ++ K E + + + +C+K ++LLNP++ G+ N
Sbjct: 420 LCDGQILDFETAEITGIGDILQRVVQMAAKFREFQLEKVEIVCMKMIILLNPDLPGLQNQ 479
Query: 469 KCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAP 528
+ + + V +AL ++ +P ++FG +++ +PE+ ++ + E L+ + GQ
Sbjct: 480 QLIEQLQDKVHSALQEHINLAFPREPNRFGNILLRLPELRSIGTKSLERLFMLNLTGQIH 539
Query: 529 TQTLLMEMLHAKRK 542
T L ++LH ++
Sbjct: 540 PSTSLSDLLHTGKR 553
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 119 bits (286), Expect = 7e-27
Identities = 50/92 (54%), Positives = 63/92 (68%)
Query: 86 DQTDTKDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKT 145
D+T + +C +CGD+ SG+HYG+ +CE CK FFKRTVQ + Y CV ++C IDK
Sbjct: 2 DKTFLVTSSQRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKN 61
Query: 146 QRKRCPFCRFQKCLDVGMKLEAVRADRMRGGR 177
R RC +CRFQKCL +GM EAVR DR GGR
Sbjct: 62 NRIRCQYCRFQKCLALGMLKEAVREDRAPGGR 93
Score = 45.6 bits (103), Expect = 1e-04
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 339 NQCEVDLFELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQR 398
+ C ++ E + ++ Q + ++WA+ F + +DQ+ LL + +L+L + QR
Sbjct: 156 DMCPLNPVEAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLIL-RICQR 214
Query: 399 M--HNG---LPDETTLHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVK 453
H G + +T L F+ + A + KL L+ D+ ++ CV
Sbjct: 215 STPHQGAVMVAKDTLLSPDNVFNIV------LEQWAGQLSCFAYKLQSLQLDMAEFACVN 268
Query: 454 FMLLLNPEVRG-IVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAA 512
++L E G + N V AL DY + YP +F +++ +P + +A
Sbjct: 269 AIMLFEQETSGGLRNRDLVDFVLNRTLDALRDYIKSSYPEKPSRFAHILLKLPTLRDMAT 328
Query: 513 R-GEEHLYQRHCAGQAPTQ--TLLMEMLHAK 540
R EE L+ + A Q + ++E+ H +
Sbjct: 329 RMAEECLFAQSLLHLAIPQLTSRMVELNHGR 359
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 110 bits (265), Expect = 2e-24
Identities = 45/76 (59%), Positives = 53/76 (69%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQK 157
C VCGDK +G HYG+ TCE CK FFKRTV+N YTC + C ID+ R RCP CRFQK
Sbjct: 57 CAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQNTCAIDRNSRSRCPSCRFQK 116
Query: 158 CLDVGMKLEAVRADRM 173
CL GMK EAV+ ++
Sbjct: 117 CLSTGMKKEAVQTTKL 132
Score = 56.4 bits (130), Expect = 5e-08
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 5/200 (2%)
Query: 339 NQCEVDL-FELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQ 397
NQ D+ +EL VL F+ VDWAR F L DQ+ LL+ +W+ + +L+
Sbjct: 178 NQNRTDVAYELAANVL----FAVVDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEASRS 233
Query: 398 RMHNGLPDETTLHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLL 457
+ + N Q A F E ++ L D+ ++ +K ++L
Sbjct: 234 PLQLYVQQMYATINAQTKQLSMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVL 293
Query: 458 LNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEH 517
+ I + V T Q++L Y + YP+ +FGKL++++ + + + E
Sbjct: 294 FRADGSLINQPRQVEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQ 353
Query: 518 LYQRHCAGQAPTQTLLMEML 537
L+ A +L +ML
Sbjct: 354 LFFADVLRGASMGEVLKKML 373
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 106 bits (255), Expect = 4e-23
Identities = 48/88 (54%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 95 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN--KKVYTCVA--ERACHIDKTQRKRC 150
EE C VCGD+ SGYHYG TCE CK FFKRTVQ K Y+CV + C +DK R +C
Sbjct: 4 EEKCAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKC 63
Query: 151 PFCRFQKCLDVGMKLEAVRADRMRGGRN 178
CR Q+C D GM L VR ++ RGGR+
Sbjct: 64 QACRLQRCFDAGMVLNGVRKEKKRGGRS 91
Score = 54.8 bits (126), Expect = 2e-07
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETT 408
+ + + L VDWA+ FK L +DQ+ LL + ++V + + + LP+
Sbjct: 165 LSNAITKELHIIVDWAKLVPGFKDLCQEDQITLLTAAGMELVVFRVIFRSIP--LPNYIY 222
Query: 409 LHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNV 468
+ + D ++ ++L + D ++ C+ +LL +PE G++
Sbjct: 223 MTTTTCLQREGCYEILNKEIVDMLLDVVDRLRSVGLDTVEFACLMAILLADPENPGLLEK 282
Query: 469 KCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEH--LYQRHCAGQ 526
V E + + L + T YP+ ++ K+++ +P + + + E+ L + G+
Sbjct: 283 PKVEELRTSFLSGLKLHVETVYPSQPERLAKILLRLPALRDVCTKAYEYFVLVRAKLEGE 342
Query: 527 APTQTLLMEMLHAKR 541
P TLL EM R
Sbjct: 343 VPMSTLLQEMFEFAR 357
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 105 bits (252), Expect = 9e-23
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 89 DTKDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRK 148
D++ ++ C VCGDK SG HYG+ TCE CK FFKR+V+ YTC A R C ID+ R
Sbjct: 234 DSEKNVQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRDCPIDQHHRN 293
Query: 149 RCPFCRFQKCLDVGMKLEAVRADRM 173
+C +CR +KCL VGM+ EAV+ R+
Sbjct: 294 QCQYCRLKKCLKVGMRREAVQRGRI 318
Score = 77.8 bits (183), Expect = 2e-14
Identities = 48/179 (26%), Positives = 81/179 (45%)
Query: 341 CEVDLFELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMH 400
C + E +C++ + LFS V+WARN FF L V DQ+ LL+ WS + VL+ M
Sbjct: 371 CGIMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMP 430
Query: 401 NGLPDETTLHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNP 460
+ F E KL L D ++ C+K ++L
Sbjct: 431 LQVAPLLATAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLRNLHVDAAEFACLKAIVLFTS 490
Query: 461 EVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLY 519
+ G+ + + + + Q AL +YT YP +FGKL++ +P + ++++ E L+
Sbjct: 491 DASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLF 549
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 99.5 bits (237), Expect = 6e-21
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQK 157
C VCGDK SG HYG+ TCE CK FFKR+++ Y+C R C +D R +C +CR +K
Sbjct: 79 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRNQCQYCRLKK 138
Query: 158 CLDVGMKLEAVRADRMRGGRNKFGPM 183
CL VGM+ EAV+ R+ GP+
Sbjct: 139 CLKVGMRKEAVQKGRIPSTHPDVGPL 164
Score = 75.8 bits (178), Expect = 8e-14
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 341 CEVDLFELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHL-HQRM 399
C ++ E ++ + L S V+WA+N F+ L + DQ LL+ WS + L+ H
Sbjct: 202 CNINGLENTPELAARLLVSAVEWAKNIPFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSP 261
Query: 400 HNGLPDETTLHNGQKFDXXXXXXXXVPSLADH-------FNELQNKLAELKFDVPDYICV 452
+ P T+ +G + V S D F E KL + D ++ C+
Sbjct: 262 FHISPTLTSNSSGFAGNGGGYLNTRVMSAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACL 321
Query: 453 KFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAA 512
K ++L NP+ +G+ V Q+AL DY T YP +FGKL++ +P + L
Sbjct: 322 KAIVLFNPDSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRP 381
Query: 513 RGEEHLYQRHCAGQAPTQTLLMEML 537
E+L+ + +LL +ML
Sbjct: 382 VSVENLFFSRLSMGNTVDSLLNDML 406
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 99.1 bits (236), Expect = 8e-21
Identities = 42/76 (55%), Positives = 48/76 (63%)
Query: 91 KDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRC 150
K +I C VCGD +G HYG++ CE CKGFFKRTV+ +YTC C IDK R RC
Sbjct: 35 KPIIWGNCKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSNDCFIDKVHRNRC 94
Query: 151 PFCRFQKCLDVGMKLE 166
CRF KCL GMK E
Sbjct: 95 QKCRFVKCLTAGMKKE 110
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 98.7 bits (235), Expect = 1e-20
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 97 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQ 156
+C VC D+ SG HYG++TCE CKGFFKR+V+ VY C+ C +DK R RC CR
Sbjct: 736 ICLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVYHCMFRETCIVDKVLRNRCQKCRMD 795
Query: 157 KCLDVGMKLEAVRADR 172
KCL VGM+ AV+ +R
Sbjct: 796 KCLAVGMQKSAVQYER 811
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 427 SLADHFNELQNKLAELK---FDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALL 483
SL ++N ++ ++ D ++ +K +LL +P+ + VN+K + + +T+ +L
Sbjct: 909 SLGQRLTAMRNLISSMRRMSVDATEFAYLKGLLLFDPD-KATVNIKQITDLQETISESLQ 967
Query: 484 DYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLY 519
Y P +F L++ +P L E ++
Sbjct: 968 VYLSKRQPPETTRFASLLLRLPAARMLTHEVLEEVF 1003
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 97.9 bits (233), Expect = 2e-20
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQK 157
C VC DK +GYHYG+ TCE CKGFFKRTVQ + YTC + C I++ R RC +CRF+K
Sbjct: 823 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFEK 882
Query: 158 CLDVGM 163
C+ GM
Sbjct: 883 CVKSGM 888
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 438 KLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPT 492
KL L DV ++ C+ ++LL+P+ G+V+ V E V + L DY + YP+
Sbjct: 1012 KLRNLNMDVNEFSCLSGLVLLSPDAPGVVDKDKVTELQTNVTSCLRDYEMYRYPS 1066
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 95.1 bits (226), Expect = 1e-19
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 95 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCR 154
E LC VCGD SG HYG+ TC+ C GFF R+V+ VYTC C +DK +R +C CR
Sbjct: 32 EILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGGCTVDKKRRNQCQACR 91
Query: 155 FQKCLDVGMKLEAVRADR 172
F+KCL+V M AV+ +R
Sbjct: 92 FKKCLEVKMNRFAVQQER 109
Score = 46.8 bits (106), Expect = 4e-05
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 425 VPSLAD--HFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAAL 482
V ++AD E+ ++ L+ ++ C+K ++L P++R + + + V Q L
Sbjct: 194 VATMADIRKLQEIGSRFRALQVCEAEFACLKAIVLFKPDLRDLRDPQQVECYQDQAQIML 253
Query: 483 LDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEM 536
DY + Q +FGKL++++P + + + E L+ R G ++LL +M
Sbjct: 254 GDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTIGSVAIESLLCDM 307
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 91.5 bits (217), Expect = 2e-18
Identities = 38/75 (50%), Positives = 46/75 (61%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQK 157
C VC SG HYG+ TCE CK FF RTV+ K Y C +C +DK R +C CRF+K
Sbjct: 22 CAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTYICEGSGSCRVDKQNRTQCQACRFKK 81
Query: 158 CLDVGMKLEAVRADR 172
C VGM+ EA+R R
Sbjct: 82 CATVGMRREAIRRGR 96
Score = 44.0 bits (99), Expect = 3e-04
Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 343 VDLFELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMH-N 401
V ++ +C +L S +DW+R F L V +Q +L+ W ML++ +H +
Sbjct: 143 VSMYHRVCSIL----VSTLDWSRRVPMFANLDVCEQYSVLRSRWCEMLIVSAAQYEVHID 198
Query: 402 GLPDETTLHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELK-FDVPDYICVKFMLLLNP 460
G+P + F L Q + L+ + +Y C+K ++L +P
Sbjct: 199 GIPLAYEVEMNPGFCNEKQI-----QLKRSLRNFQESVWRLRGLEEAEYACLKTIILFSP 253
Query: 461 EVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHL 518
+ V+ + V +AL + +P ++GK+++ + + ++ A E L
Sbjct: 254 DASEGPFVQEFESLQELVLSALDRFCRARFPEEPSRYGKVLLKLMSLKSVIAEDIETL 311
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 88.6 bits (210), Expect = 1e-17
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 95 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCR 154
+++C VCGD+ +G HYG+ C+ C GFFKRT + + + C A+ AC + T R C CR
Sbjct: 21 DQVCVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRNECKACR 80
Query: 155 FQKCLDVGMKLE 166
+KC++VGMK +
Sbjct: 81 MKKCVEVGMKFD 92
Score = 68.5 bits (160), Expect = 1e-11
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 357 LFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFD 416
L + + +ARN F L DQ+ LL++ W + +LD + + + + G D
Sbjct: 226 LSASIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYWALPLEIASLLAVTGGCHGD 285
Query: 417 XXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQ 476
+ L EL +L + D+ + C+K ++L PE +G+ + V +
Sbjct: 286 SYRHKASEIKLL----QELLARLRSFQMDLNELACLKAIVLFRPETKGLKDSDQVDKIQD 341
Query: 477 TVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARG-EEHLYQR 521
+Q L +T+T +PT +FGKL++ + +H+LA + EE L+++
Sbjct: 342 HIQLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEEVLFRK 387
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 87.4 bits (207), Expect = 3e-17
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQK 157
C +C D+ +G HYG +C+ CKGFF+R+V+ VY+C +R C I+K +R +C FCR +K
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRNQCRFCRLRK 69
Query: 158 CLDVGMKLE 166
C GMK E
Sbjct: 70 CFRAGMKKE 78
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 83.8 bits (198), Expect = 3e-16
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 98 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERA---CHIDKTQRKRCPFCR 154
C VCGD+ SG HYG+ C+ C GFFKR+++ + YTC A C +DK R +C CR
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQCRSCR 67
Query: 155 FQKCLDVGMKLEAVRAD 171
+KC DV M + D
Sbjct: 68 LKKCFDVSMNKDVQFVD 84
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 73.3 bits (172), Expect = 4e-13
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Query: 355 QNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQK 414
Q L+ V WARN F L DQ LL++ WS + VL + + + G +
Sbjct: 235 QLLYMSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLPLDMGPLLSAA-GLQ 293
Query: 415 FDXXXXXXXXVPSLADHFNELQN---KLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCV 471
D V +AD LQN + L+ D +Y C+K ++L P++RG+ + V
Sbjct: 294 VDKAPTDRI-VAGMAD-IRLLQNIVTRFKRLQIDSTEYACLKAIVLFKPDLRGLRAPQLV 351
Query: 472 REGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQT 531
Q+ L +Y + YP Q +FGKL++++P + ++ + E L+ R P +
Sbjct: 352 ERLQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGTLDNVPIER 411
Query: 532 LLMEM 536
+L +M
Sbjct: 412 MLCDM 416
Score = 70.5 bits (165), Expect = 3e-12
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 97 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCP 151
LC VCGD+ SG HYG+ TC+ C+GFFKR+++ Y C C +D +R +CP
Sbjct: 22 LCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCP 76
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 64.9 bits (151), Expect = 2e-10
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 113 LTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADR 172
+TC+ C+GFFKR+V+ Y C + C ID +R +C CR +KC ++ M +AV+ +R
Sbjct: 1 MTCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQHER 60
Score = 32.3 bits (70), Expect = 1.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 357 LFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVL 392
L+ V W RN F L DQ L+++SWS + VL
Sbjct: 159 LYMTVKWVRNIPTFLDLPFRDQAILIEESWSELFVL 194
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 58.0 bits (134), Expect = 2e-08
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 11/188 (5%)
Query: 357 LFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGL----PDETTLHNG 412
LF WA+ F L DQ+ LL+++WS + +++ + M + D G
Sbjct: 179 LFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPIVSDIVEKTPG 238
Query: 413 QKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVR 472
Q D V NE+ KL +L+ ++ +K + L NP+ + + ++
Sbjct: 239 QHLD-------KVLHTMGKLNEVVFKLVQLQLSRAEFSLLKALALFNPDTEQLADAVQIQ 291
Query: 473 EGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTL 532
Q AL +Y YP ++FG++++ + + A+ + EH++ G TL
Sbjct: 292 AVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFFNKLLGSTSIYTL 351
Query: 533 LMEMLHAK 540
+ ++L +K
Sbjct: 352 VDDILLSK 359
Score = 43.2 bits (97), Expect = 5e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 140 CHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADR 172
C ++K R C FCR +KCL VGMK EAV+ R
Sbjct: 66 CPVNKRYRNSCQFCRMRKCLAVGMKREAVQQAR 98
>SB_56035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 464 GIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHC 523
G+ + + + Q L +Y + YPT +FG+L++++P + ++A E L+ +
Sbjct: 4 GLKDPEQIETTQDQAQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFKKT 63
Query: 524 AGQAPTQTLLMEM 536
G P + LL +M
Sbjct: 64 IGTVPIERLLSDM 76
>SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22)
Length = 282
Score = 39.5 bits (88), Expect = 0.007
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 349 MCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETT 408
+C+ + Q L V+WA++ F L +DDQ+ LL+ S LVL + +R N L D
Sbjct: 54 ICESMRQQLLILVEWAKHLPCFCELPLDDQVALLRAHASEHLVLG-VSRRSLN-LKDILL 111
Query: 409 LHNGQKFDXXXXXXXXVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNP 460
L N +E+ + +L D +Y C+K ++ NP
Sbjct: 112 LGNDLVIPRQAGDTEVRKIATRILDEIVLPMRQLNIDDVEYSCLKAIVFFNP 163
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 36.7 bits (81), Expect = 0.047
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Query: 113 LTCESCKGFFKRTVQNKKVYTCVAERACH-IDKTQ-------RKRCPFCRFQKCLDVGMK 164
LTC +CKGF+K N K C+ CH + KTQ R RCP C ++ L +
Sbjct: 16 LTCSACKGFYK----NPKRLPCLHAFCCHCLKKTQRGTKLCERMRCPTCDYELDLVDSVA 71
Query: 165 LEAV 168
++A+
Sbjct: 72 IDAL 75
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 32.7 bits (71), Expect = 0.77
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 451 CVKFMLLL---NPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLV 501
CV+F+ + NP R I K R+ + ++ D T +C PTI D+FGK V
Sbjct: 773 CVRFIQGIKPSNPLYRLINGTKINRDTHYNLRRVSAD-TFSCKPTITDRFGKFV 825
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 29.9 bits (64), Expect = 5.4
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 115 CESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMK 164
C CK F T KK Y C C I K Q C C CLDV ++
Sbjct: 1927 CGICKHF---TGNEKKPYHCDKCGICRIHKDQSFHCEVCNV--CLDVRLQ 1971
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.137 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,000
Number of Sequences: 59808
Number of extensions: 616632
Number of successful extensions: 1088
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 41
length of query: 542
length of database: 16,821,457
effective HSP length: 86
effective length of query: 456
effective length of database: 11,677,969
effective search space: 5325153864
effective search space used: 5325153864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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