GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000716-TA|BGIBMGA000716-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000536|Nuclear hormone receptor,
ligand-binding, IPR001723|Steroid hormone receptor, IPR000324|Vitamin
D receptor, IPR008946|Nuclear receptor, ligand-binding
         (542 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    28   0.55 
AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione S-tran...    28   0.55 
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    27   1.3  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    27   1.3  
AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione S-tran...    25   6.8  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 69  GTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVCGDKVSGYHYGLLTCESCKGF 121
           G  GEPG   P   +     D +  +++L P+ GDK      GL+  +  KGF
Sbjct: 631 GPKGEPGLLGPPGPSGEPGRDAEIPMDQLKPIKGDKGEKGENGLMGIKGEKGF 683


>AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione
           S-transferase D12 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 482 LLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHL 518
           ++ Y LT YP +Q  F K+   +P++       EE L
Sbjct: 166 MMKYDLTAYPNVQRWFAKMGTHIPDLEPTRKTIEEEL 202


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 144 KTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGRNKFGPMYKR 186
           +T++ R     +QK +D+  +LE    D++  G N +   +K+
Sbjct: 102 ETEKDRDAQAIYQKSIDINKELEGKEDDKVYRGLNNYTQFFKK 144


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 144 KTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGRNKFGPMYKR 186
           +T++ R     +QK +D+  +LE    D++  G N +   +K+
Sbjct: 102 ETEKDRDAQAIYQKSIDINKELEGKEDDKVYRGLNNYTQFFKK 144


>AF513635-1|AAM53607.1|  212|Anopheles gambiae glutathione
           S-transferase D4 protein.
          Length = 212

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 483 LDYTLTCYPTIQDKFGKLVMVVP 505
           L Y L  YP I+D  G++V  +P
Sbjct: 168 LGYELAPYPRIRDWLGRVVAEIP 190


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.137    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,085
Number of Sequences: 2123
Number of extensions: 20655
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 542
length of database: 516,269
effective HSP length: 67
effective length of query: 475
effective length of database: 374,028
effective search space: 177663300
effective search space used: 177663300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)