Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000715-TA|BGIBMGA000715-PA|IPR006089|Acyl-CoA
dehydrogenase, IPR006092|Acyl-CoA dehydrogenase, N-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR006090|Acyl-CoA dehydrogenase, type 1, IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   2.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   5.0  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   6.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   8.7  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 120 IMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLV 156
           + T    +  G   I ++ + E+ KKY+GR +  PL+
Sbjct: 252 VSTTRPETIFGDRAIAVSPHDERYKKYVGRFVKHPLI 288


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 61   EHCGGLGLGVFEACIL 76
            EHC GLG  +  AC+L
Sbjct: 1059 EHCSGLGSSITRACVL 1074


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 298 HEATKYSLERKTFGVPIARHQAVAFMLAD--MAIGVETARIAWQRAAWMVDHGQKNTVMA 355
           H++T + LE KTF +    H  + +   D  M I  E   I  Q+  +   H +  T   
Sbjct: 256 HDSTLHLLETKTFSIVFRLHHCLQYTNTDLEMHIWEEKETIYEQQMTYQKVH-KLRTDFP 314

Query: 356 SVAKCHASEI 365
             + C AS+I
Sbjct: 315 EPSFCSASKI 324


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 239 QNMGQRASDTRGITFEDVRIPKENVLIGEGAGF-KIAMGAFDKTRPPVAAGATGLAQRAL 297
           ++MG + S     TF  V +    VL+G   G   +  GA D T   +        ++ +
Sbjct: 247 RSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGALDITDADIRNINKLARKKNV 306

Query: 298 HEATKYSLERKTFGVPIARHQAVAFML 324
            E    SL    +G    + QA+  +L
Sbjct: 307 FELLSTSLAPSIYGYEYVK-QAILLLL 332


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,760
Number of Sequences: 5004
Number of extensions: 75504
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 4
length of query: 424
length of database: 2,362,478
effective HSP length: 75
effective length of query: 349
effective length of database: 1,987,178
effective search space: 693525122
effective search space used: 693525122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)