Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000715-TA|BGIBMGA000715-PA|IPR006089|Acyl-CoA
dehydrogenase, IPR006092|Acyl-CoA dehydrogenase, N-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR006090|Acyl-CoA dehydrogenase, type 1, IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 514 e-146
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 1e-47
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 2e-38
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 145 7e-35
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 6e-30
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 3e-25
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 6e-22
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 64 2e-10
SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08) 54 2e-07
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 9e-07
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 50 4e-06
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 49 8e-06
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16) 46 4e-05
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-05
SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9) 33 0.44
SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 31 1.8
SB_20822| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 514 bits (1267), Expect = e-146
Identities = 240/328 (73%), Positives = 279/328 (85%), Gaps = 2/328 (0%)
Query: 97 GGMDMGVFDGCLVAEELAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKKYLGRLIDEPLV 156
GG+ +GV DGC+V EEL+Y C+GI TA+EA+ L + P+I+AGN+EQ+KKYLGR+I EP++
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVILAGNEEQKKKYLGRMIKEPIM 234
Query: 157 AAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKCPA 216
AAY VTEP AGSDVAGIKTRAEKKGDE+++NGQKMWITNGGVANWYFVLART D A
Sbjct: 235 AAYCVTEPTAGSDVAGIKTRAEKKGDEYVINGQKMWITNGGVANWYFVLART--DSSASA 292
Query: 217 SKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMG 276
K FTGFIV+ + PGVTPGRKEQNMGQRASDTRGITFEDV +PKENVL EG GFKIAMG
Sbjct: 293 GKGFTGFIVDADTPGVTPGRKEQNMGQRASDTRGITFEDVVVPKENVLGAEGIGFKIAMG 352
Query: 277 AFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFMLADMAIGVETARI 336
AFDKTRPPVA+ A GLA+RAL EATKYS+ERKT G I HQAV F+LADMAIGVETAR+
Sbjct: 353 AFDKTRPPVASSAVGLARRALEEATKYSMERKTMGKYICEHQAVQFLLADMAIGVETARL 412
Query: 337 AWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAK 396
A QR+AW +D G++NT AS+AKC A ++ANK ATDAVQ+FGGNGFN EYPVEKLMRDAK
Sbjct: 413 ATQRSAWEIDQGRRNTYYASIAKCLAGDVANKCATDAVQIFGGNGFNQEYPVEKLMRDAK 472
Query: 397 IYQIYEGTSQIQRLIISREILTAATQTN 424
I+QIYEGT+QIQR+II R ++ AA N
Sbjct: 473 IFQIYEGTAQIQRMIIGRSLIEAAKMMN 500
Score = 46.4 bits (105), Expect = 4e-05
Identities = 18/32 (56%), Positives = 28/32 (87%)
Query: 9 LTDEQKALQELARKFTKDEIIPVAGQYDKTGE 40
++DE +ALQ++ARKF ++EI+P A ++DKTGE
Sbjct: 38 MSDELRALQDMARKFAREEIMPKAAEHDKTGE 69
Score = 45.6 bits (103), Expect = 8e-05
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 64 GGLGLGVFEACILSEELAYGCSGIMAAVYITEVGGM 99
GG+GLGV + C+++EEL+Y CSGI A+ + M
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEM 210
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 188 bits (457), Expect = 1e-47
Identities = 135/403 (33%), Positives = 196/403 (48%), Gaps = 43/403 (10%)
Query: 5 HFNELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCG 64
H LT EQ L+E+A F ++E+ P A Q DK + P +++ W+ G
Sbjct: 37 HLTGLTSEQIHLREVAYNFCQNELAPYADQIDKENNF--PKLREFWK----------KLG 84
Query: 65 GLGLGVFEACILSEELAYGCSGIMAAVYITEVGGMDMGVFDGCLVAEELAYGCTGIMTAM 124
LG GI V + GG+ G + +V EE++ I +
Sbjct: 85 DLGF----------------HGITVPV---DDGGIGSGYMEHIIVLEEMSRVSGSIALSY 125
Query: 125 EA-SGLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDE 183
A S L I GNKEQ++KYL +L+ + A ++E AGSDV +K RA+K GD
Sbjct: 126 GAHSNLCINQIARNGNKEQKRKYLPKLLSGEHIGALAMSEANAGSDVVSMKLRADKDGDH 185
Query: 184 WILNGQKMWITNGGVANWYFVLARTNPDPKCPASKAFTGFIVEREWPGVTPGRKEQNMGQ 243
++LNG KMWITNG A+ V A+TNP K P A T F+VE+ PG + K +G
Sbjct: 186 YVLNGHKMWITNGPDADVLIVYAKTNPSSKKP-EHAITTFLVEKGMPGFSTSPKLDKLGM 244
Query: 244 RASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRALHEATKY 303
R S+T + F++ RIP ENV+ G + M D R +AAG GL Q L Y
Sbjct: 245 RGSNTCELVFDNCRIPAENVMGEVNKGVYVLMSGLDIERLILAAGPVGLMQACLDVTVPY 304
Query: 304 SLERKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHAS 363
R FG I Q A ++ + + +A + + K A++ + +
Sbjct: 305 LHARTAFGQKIGEFQDCASII----LVLSSAFVCYSFGV-----NPKPRDCAAII-LYTA 354
Query: 364 EIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQ 406
E A + A DA+Q GGNG+ +YP + +RDAK+Y+I GTS+
Sbjct: 355 ENATQVALDAIQCLGGNGYINDYPTGRFLRDAKLYEIGAGTSE 397
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 157 bits (381), Expect = 2e-38
Identities = 107/338 (31%), Positives = 166/338 (49%), Gaps = 9/338 (2%)
Query: 82 YGCSGIMAAVYITEVGGMDMGVFDGCLVAEEL-AYGCTGIMTAMEASGLGQTPIIIA-GN 139
+G +G + GGM + +AEEL + C G+ A+ TP ++ G+
Sbjct: 299 FGKAGYFGVNKPVKYGGMGLDYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGS 358
Query: 140 KEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGQKMWITNGGVA 199
+E ++++L I V GV+E GAGSDVA IKT A K GD++++NG KMW TNG A
Sbjct: 359 EELKQQFLVPTIAGDFVTCLGVSETGAGSDVASIKTTAVKDGDDYVINGGKMWTTNGIQA 418
Query: 200 NWYFVLARTNPDPKCPASKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIP 259
+W +LA T D P T + PG+ R +G SDT FE+VR+P
Sbjct: 419 DWMCLLANT--DKGHPHFNK-TLICLPLNLPGIQRARNIDKLGMHCSDTAEFYFENVRVP 475
Query: 260 KENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLA--QRALHEATKYSLERKTFGVPIARH 317
+ + EG GF M F + R V AGA+ L +R + E +Y R FG I +
Sbjct: 476 QSYRIGEEGMGFVYQMLQFVEER--VFAGASVLVSLERLIKETAEYCKGRTAFGKSILDN 533
Query: 318 QAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVF 377
Q V + LA++ VE R R + + + ++AS+ K A + + +Q +
Sbjct: 534 QYVHYRLAELQTEVELLRSLVYRTTDLHIKKKDSNLLASMLKLKAGRLVREVTDSCLQFW 593
Query: 378 GGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISRE 415
GG GF ++ V + RD ++ I G ++ II+++
Sbjct: 594 GGMGFTSDVEVSRAYRDNRLLSIGGGADEVMLSIIAKK 631
Score = 42.7 bits (96), Expect = 5e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 3 FPHFNELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYP-WPVVKKAWEVGLMNGHIPE 61
+ H + TD+ L+E KF + EI P +++K +P + KK + G + P
Sbjct: 252 YSHESIFTDDHVQLRENLNKFIEKEINPFVDEWEKAKMFPAHELFKKFGKAGYFGVNKPV 311
Query: 62 HCGGLGLGVFEACILSEEL-AYGCSGIMAAV 91
GG+GL + ++EEL + C G+ A+
Sbjct: 312 KYGGMGLDYSFSVAMAEELGSIKCGGVPMAI 342
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 145 bits (351), Expect = 7e-35
Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 3/231 (1%)
Query: 155 LVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGQKMWITNGGVANWYFVLARTNPDPKC 214
+V GV+E GAGSDVAG+KT A+K GD++++NG KMWITN A++ +LA T+ D K
Sbjct: 1 MVGCIGVSEVGAGSDVAGLKTTAKKDGDDYVINGSKMWITNSPSADFICLLANTSDD-KP 59
Query: 215 PASKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIA 274
+K+ +V PG+T +G R+S+T + F++VR+P+ N + EGAGF +
Sbjct: 60 HVNKSL--IMVPMNTPGITLSTHLDKLGMRSSETAQVFFDNVRVPQRNRIGHEGAGFMMQ 117
Query: 275 MGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFMLADMAIGVETA 334
M F + R AA + ++ Y ERKTFG + +Q + F +A++ VE
Sbjct: 118 MLQFQEERLFGAANMIKGLEHCINATIDYCKERKTFGNALIDNQVIHFRMAELQTEVECL 177
Query: 335 RIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTE 385
R +A G+ T +AS+AK A + + +Q +GG G+ E
Sbjct: 178 RALVYQATEQYVRGRDVTNLASMAKLKAGRLGREVTDSCLQYWGGMGYMWE 228
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 128 bits (310), Expect = 6e-30
Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 2/205 (0%)
Query: 211 DPKCPASK-AFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGA 269
DPK K T FIVER + GV G E+ MG +AS+T + F++V +P ENVL GEG
Sbjct: 148 DPKTGEVKDKVTAFIVERGFGGVESGPPEKKMGIKASNTAEVYFDNVPVPVENVLGGEGN 207
Query: 270 GFKIAMGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFMLADMA- 328
GFK+AM + R +A +G + + +A ++ R FG I A+ +A MA
Sbjct: 208 GFKVAMNILNNGRFGMAGALSGTMKGLIEKAVDFAANRTQFGAKIETFGAIQEKIARMAM 267
Query: 329 IGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPV 388
+ T +A+ +A M V A+++K ASE A A + +Q+ GG GF V
Sbjct: 268 LHYVTESMAYMISANMDSGATDFQVEAAISKVFASEAAWFVADECIQILGGTGFMKSAGV 327
Query: 389 EKLMRDAKIYQIYEGTSQIQRLIIS 413
E++MRD +I++I+EGT+ I RL+I+
Sbjct: 328 ERVMRDLRIFRIFEGTNDILRLMIA 352
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 113 bits (271), Expect = 3e-25
Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 42/267 (15%)
Query: 86 GIMAAVYITEVGGMDMGVFDGCLVAEELAYGCTGIMTAMEASGLGQTPIIIAGNKEQQKK 145
G++ +GG + F + EE++ GC + M + G Q+++
Sbjct: 85 GLLGVEVPESLGGTGLDAFAYAIAMEEISRGCASLGCIMSVNNYG--------TDAQKEE 136
Query: 146 YLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGQKMWITNGGVANWYFVL 205
++ ++ V + ++EP GSD KT A GD ++LNG K WITNG Y
Sbjct: 137 WIKPFLNGDRVGCFALSEPDNGSDAGAAKTTAVLDGDHYVLNGTKAWITNG-----Y--- 188
Query: 206 ARTNPDPKCPASKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKENVLI 265
+ A+ + F+V + PG+T G KE +G RA+ T + FED RIPKEN+L
Sbjct: 189 -------ESEAAVGISAFLVPKPTPGLTLGNKEDKLGIRATSTCYLVFEDCRIPKENLLG 241
Query: 266 GEGAGFKIAMGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFMLA 325
G GFKIAM A D A Y+ +R F I++ Q + LA
Sbjct: 242 EPGYGFKIAMAALDC-------------------AVDYADKRMAFNQKISKLQTIQMKLA 282
Query: 326 DMAIGVETARIAWQRAAWMVDHGQKNT 352
D+A +E AR+ +AA + D G T
Sbjct: 283 DIATQLEAARLLTWKAAAIKDAGMNYT 309
Score = 67.7 bits (158), Expect = 2e-11
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 8 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 67
+L + + L++ R F +E+ PVAG++DK YP VK E+GL+ +PE GG G
Sbjct: 40 KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99
Query: 68 LGVFEACILSEELAYGCSGIMAAVYITEVG 97
L F I EE++ GC+ + + + G
Sbjct: 100 LDAFAYAIAMEEISRGCASLGCIMSVNNYG 129
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 102 bits (244), Expect = 6e-22
Identities = 95/331 (28%), Positives = 145/331 (43%), Gaps = 25/331 (7%)
Query: 86 GIMAAVYITEVGGMDMGVFDGCLVAEELAYGCTGIMTAMEASG-LGQTPIIIAGNKEQQK 144
G+M +E GG D F LV EELA + + L I+ G KEQ++
Sbjct: 86 GLMGIEIGSEYGGTDSTFFAANLVIEELAKVDPSVSVMCDVQNTLINNLIMTYGTKEQKQ 145
Query: 145 KYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRAEKKGDEWILNGQKMWITNGGVANWYFV 204
+YL +L +V + ++E +GSD +KT A +K ++LNG KMWITN A + V
Sbjct: 146 EYLPQLAQH-MVGGFCLSEESSGSDAFALKTVALEKDGHFVLNGSKMWITNAEYAGVFLV 204
Query: 205 LARTNPDPK-CPASKAFTGF----IVERE-----WPGVTPGRKEQNMGQRASDT--RGIT 252
+A NP + C + G E++ +P T N G A T +GIT
Sbjct: 205 MANVNPSERPCNDIGQYEGDKSNPSPEKKTTLDPFPTKTASSSISNKGHTAEKTGYKGIT 264
Query: 253 FEDVRIPKENVLIG---EGAGFKIAMGA---FDKTRPPVAAGATGLAQRALHEATKYSLE 306
V + IG + G + + FD + P ++ G + KY++
Sbjct: 265 TFIVPRETPGLSIGKKEDKLGIRASSTCPVHFDNVKVP-SSSVLG----EVGHGYKYAIG 319
Query: 307 RKTFGVPIARHQAVAFMLADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIA 366
G QA+ +A++ +E AR+ AA + G ++AK ASE+A
Sbjct: 320 MLNEGRIGIGAQAMQHQIAEVRTKIEAARLLVYNAARRKEAGLPVVREGAMAKYFASEVA 379
Query: 367 NKAATDAVQVFGGNGFNTEYPVEKLMRDAKI 397
+ ++ GG GF YP+EK RD KI
Sbjct: 380 TLTTSKCMEWMGGVGFTKSYPIEKYYRDCKI 410
Score = 43.6 bits (98), Expect = 3e-04
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 8 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 67
+L++E++ +++ +F K++I P+ + D+ + ++K +E GLM I GG
Sbjct: 41 QLSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGGTD 100
Query: 68 LGVFEACILSEELA 81
F A ++ EELA
Sbjct: 101 STFFAANLVIEELA 114
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 64.1 bits (149), Expect = 2e-10
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 134 IIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWILNGQKMW 192
+I G+ Q++K+L L+D + + + +TEP A SD A I++ GD ++LNG+K W
Sbjct: 318 LIRYGSDAQKEKWLEPLLDGRIRSCFAMTEPQVASSDAANIESSIRVDGDHYVLNGRKWW 377
Query: 193 ITNGGVANWYFVLARTNPDPKCPASKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGIT 252
I+ GV Y LA + ++ ++ E + + +
Sbjct: 378 IS--GV---YLFLAL-----QWAVIQSMVLVPMDSEGVRIVRPLSVFGYDDAPAGHAELE 427
Query: 253 FEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRAL 297
F +VR+PKEN+++G G GF+IA G R G A+R+L
Sbjct: 428 FVNVRVPKENIILGPGRGFEIAQGRLGPGRIHHCMRLIGHAERSL 472
>SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08)
Length = 100
Score = 54.4 bits (125), Expect = 2e-07
Identities = 30/91 (32%), Positives = 55/91 (60%)
Query: 327 MAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEY 386
M+ VE + A ++ GQ AS++K ++++A+ DA+Q+ GG G+ EY
Sbjct: 1 MSSEVEMCKEFNYSVAKRLNDGQYVVKEASMSKLLSTKMADSVIYDALQLLGGYGYMEEY 60
Query: 387 PVEKLMRDAKIYQIYEGTSQIQRLIISREIL 417
P+ +L+RD+++ I GTS+I + II++ I+
Sbjct: 61 PLARLLRDSRLGPIGGGTSEILKEIIAKMII 91
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 52.0 bits (119), Expect = 9e-07
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 138 GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWILNGQKMWITNG 196
G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD +++NG+K W +
Sbjct: 138 GSPEQKKKWLDPLLNGEMRSAFCMTEPGVASSDATNMECKITRHGDHYVINGRKWWSSGA 197
Query: 197 G 197
G
Sbjct: 198 G 198
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 277 AFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFMLADMAIGVETARI 336
AFD R P GLAQR+L + +++R FG +A V +A+ + +E AR+
Sbjct: 235 AFDHVRVPACNMILGLAQRSLELMLQRAVDRVAFGTRLAEKSIVQQQIAESRMEIEYARL 294
Query: 337 AWQRAAWMVD 346
+AA+++D
Sbjct: 295 MVLKAAYLLD 304
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 50.0 bits (114), Expect = 4e-06
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 138 GNKEQQKKYLGRLIDEPLVAAYGVTEPG-AGSDVAGIKTRAEKKGDEWILNGQKMW 192
G+ EQ+KK+L L++ + +A+ +TEPG A SD ++ + + GD +++NG+K W
Sbjct: 98 GSPEQKKKWLDPLLNGDIRSAFCMTEPGVASSDATNMECKITRHGDHYVINGRKWW 153
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 48.8 bits (111), Expect = 8e-06
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 110 AEELAYGCTGIMTAMEAS---GLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGA 166
A+ YGC GI + + + I + G KEQQ+K+L ++ + TE G
Sbjct: 119 AQNPGYGCWGIDLTLPSDLHRVMFMPTIKLMGTKEQQEKWLPLAEMHQILGTFAQTELGH 178
Query: 167 GSDVAGIKTRA--EKKGDEWILN-----GQKMWITN-GGVANWYFVLARTNPDPKCPASK 218
G+ V G++T A +K+ +++L+ K W N G N+ V+AR D K
Sbjct: 179 GTFVRGLETTATYDKQTQQFVLHSPSLTASKWWPGNLGHSTNYCIVVARLIIDDKEYGLH 238
Query: 219 AF----TGFIVEREWPGVTPGR--KEQNMGQRASDTRGITFEDVRIPKENVLIG 266
F + PGVT G + + +D + + VR+P+E +L+G
Sbjct: 239 YFLLQTRDLKTHQPLPGVTIGEIGPKTSRYYNVNDNGFLLLDHVRVPREQMLMG 292
>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
Length = 647
Score = 46.4 bits (105), Expect = 4e-05
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 110 AEELAYGCTGIM-TAMEAS-GLGQTPIIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAG 167
A ELA G M T M L ++ G + K L + V +G+TE G G
Sbjct: 122 AHELAAVVDGSMATKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLEDVGCFGLTELGYG 181
Query: 168 SDVAGIKTRA--EKKGDEWILN-----GQKMWITNGGV-ANWYFVLARTNPDPKCPASKA 219
++ ++T A + + E+I+N QK WITNG A+ V A+ + K ++
Sbjct: 182 NNAVQMETTATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIVVFAQLYVNGK---NEG 238
Query: 220 FTGFIVE------REWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKENVL 264
G +V +E PG + MG D F++VR+P+EN+L
Sbjct: 239 IHGVLVPIRDKNLKEMPGSSIHDMGPKMGLNGVDNAKFIFDNVRVPRENLL 289
>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 46.0 bits (104), Expect = 6e-05
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 134 IIIAGNKEQQKKYLGRLIDEPLVAAYGVTEPGAGSDVAGIKTRA--EKKGDEWILN---- 187
++ G + K L + V +G+TE G G++ ++T A +K+ E+++N
Sbjct: 169 VLKLGTERHHSKLLKGIDSLQEVGCFGLTELGYGNNAVQMETTAVYDKETKEFVVNTPSP 228
Query: 188 -GQKMWITNGGV-ANWYFVLARTNPDPKCPASKAFTGFIVEREW---PGVTPGRKEQNMG 242
QK WITNG A+ V A+T D I + + PGV MG
Sbjct: 229 LAQKYWITNGACHAHHIVVFAQTYVDGVNQGIHGVLVPIRDHDLHVKPGVRIDDMGHKMG 288
Query: 243 QRASDTRGITFEDVRIPKENVL 264
D F++V +P+EN+L
Sbjct: 289 LNGVDNAKFYFDNVHVPRENLL 310
>SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9)
Length = 410
Score = 33.1 bits (72), Expect = 0.44
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Query: 265 IGEG-AGFKIAMGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIARHQAVAFM 323
IG+G A K+ G + PP A A +AL +A+K E HQ +
Sbjct: 73 IGQGQASAKLFCGIMNMPPPPKAK-AYNCHNKALLKASKAVAEESISVAGQEVHQLKSTS 131
Query: 324 LADMAIGVETARIAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFN 383
+D A + WQR + + +G + KC A E+ +K + N
Sbjct: 132 NSDFANSPVSCDGTWQRRGYSLLNGCVTVLSTDTGKCLAFEVLSKVCHGCQKHKSSNDPQ 191
Query: 384 TE 385
TE
Sbjct: 192 TE 193
>SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 353 VMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYE 402
++ +AK + ++ A A++ ++ FGG G+ + + L+RDA++ ++
Sbjct: 79 LLTPIAKLYTAKQAIYVASEGLESFGGQGYIEDTGLPGLLRDAQVLHAFQ 128
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 31.1 bits (67), Expect = 1.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 213 KCPASKAFTGFIVEREWPGVTPGRKEQNMGQRASDTRGITFEDVRIPKE 261
K P+S TG R P VTPGRK + SD TFE + I +E
Sbjct: 66 KTPSSHPSTGKRKSRTTPSVTPGRKRKRR-IIDSDDEDKTFEAITIKQE 113
>SB_20822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 31.1 bits (67), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 373 AVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISR 414
A + GGNG + E+ V + + + + YEGT + LI+ R
Sbjct: 1 ARDMHGGNGVSDEFHVIRHVMNLEAVNTYEGTHDVHALILGR 42
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 9 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVG 53
LT+ L + K E A Y+ TG W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.5 bits (63), Expect = 5.4
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 235 GRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQ 294
G +N Q++SD+R + I + IG G+G + + G +G+A
Sbjct: 122 GEPTENPSQQSSDSRNEDITEHGINNASFTIGSGSG-AVNSNTLSSVKRSGTVGTSGMAD 180
Query: 295 RALHEATKYSLERKTFGVPIA 315
A + S++R G+ IA
Sbjct: 181 TA--DCLPNSVDRSKEGIEIA 199
>SB_24393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 192 WITNGGVANWYFVLARTNPDPKCPASKAFTGF 223
W+T GG + WY + N C + TGF
Sbjct: 176 WLTYGGYSRWYPLSCSNNNKQSCARENSPTGF 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,567
Number of Sequences: 59808
Number of extensions: 575088
Number of successful extensions: 1454
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 38
length of query: 424
length of database: 16,821,457
effective HSP length: 84
effective length of query: 340
effective length of database: 11,797,585
effective search space: 4011178900
effective search space used: 4011178900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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