GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000714-TA|BGIBMGA000714-PA|IPR013057|Amino acid
transporter, transmembrane
         (464 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.16 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.65 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   1.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 220  LFMAVGLGITLYYLVGTGQLQYDKIKDMLF--KHPSEWPE 257
            LF+A       YYL   GQLQ     + LF  K   +WPE
Sbjct: 2241 LFVADDTNCAQYYLCNQGQLQLQVCPNGLFWNKDHCDWPE 2280


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 0.65
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 411 GLIAPAMIEVITYWEPGVGPGKYL----IWKNIL 440
           GL+ P +   +  W P   P +Y+     WK+IL
Sbjct: 418 GLVGPLLTSALASWSPLTNPKQYMEIFARWKDIL 451


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 341 IAVYCTFGLQFFVCIDIMWNGIKDKFTKRPELADYIMRTIMVTVCV--SIAAAVPQISPL 398
           +  +  F   F + I+I  NG+   FTK+      ++  +++  C+   I   + +   L
Sbjct: 26  LVTFAHFICLFPITINIRKNGLNYNFTKKCYFLRMVLIDLLIVGCILKHIFNILMKNVTL 85

Query: 399 MGVIGAFCFSILGLIAPAMIEVITY 423
             V+  FC + + +I    IE++ Y
Sbjct: 86  NDVVFIFCSAPI-IITILDIEILGY 109


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.142    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,336
Number of Sequences: 317
Number of extensions: 4513
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 464
length of database: 114,650
effective HSP length: 59
effective length of query: 405
effective length of database: 95,947
effective search space: 38858535
effective search space used: 38858535
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)