Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000714-TA|BGIBMGA000714-PA|IPR013057|Amino acid
transporter, transmembrane
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 103 5e-23
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 54 6e-08
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 31 0.45
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 30 0.79
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 28 3.2
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 5.6
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 27 7.3
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 9.7
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 103 bits (247), Expect = 5e-23
Identities = 92/376 (24%), Positives = 172/376 (45%), Gaps = 30/376 (7%)
Query: 51 KLDTP--TSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILV 108
KL TP SN + LLK+ +GTG+L +PKAFK GL+ +IV V+ +H ++L
Sbjct: 268 KLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVL-SHICFLL- 325
Query: 109 KCAHVLYKKTKKTQMSFAEVGEAALDNGPQPLRKWANAFRIFIVISLFITYFGTCSVYTV 168
L + K SF ++G GP R I+ S+ ++ G S Y
Sbjct: 326 -----LIQTRMKVPGSFGDIGGTLY--GPH--------MRFAILASIVVSQIGFSSAYIS 370
Query: 169 IIARNILQIIQFYCGDIINERFXXXXXXXXXXX--MAWIRNLKYLAPVSMIANLFMAVGL 226
+A + ++ ++ +R + L+ ++IA++F+ L
Sbjct: 371 FVASTLQACVKVISTTHREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIADVFIL--L 428
Query: 227 GITLYYLVGTGQLQYDKIKDMLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAML 286
GI Y L I D+ + +++ F + IF E I +++P++ M P+
Sbjct: 429 GILYLYFWDVITLATKGIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQMAKPK--- 485
Query: 287 GICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSITLSLGDAIPAQIVKLSIAIAVYCT 346
+ +L M+ ++L++I +G L Y FG +V+ + L++ ++ I++ AIA+ +
Sbjct: 486 NLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPESTFTVIIQFLYAIAILLS 545
Query: 347 FGLQFFVCIDIMWNGIKDKFTKRPELADY---IMRTIMVTVCVSIA-AAVPQISPLMGVI 402
LQ F I I+ GI + KR + +R ++V + + I+ A ++ + ++
Sbjct: 546 TPLQLFPAIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMV 605
Query: 403 GAFCFSILGLIAPAMI 418
G+ C L + P M+
Sbjct: 606 GSVCCIPLIYMYPPML 621
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 53.6 bits (123), Expect = 6e-08
Identities = 77/373 (20%), Positives = 155/373 (41%), Gaps = 41/373 (10%)
Query: 61 TLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCAHVLYKKTKK 120
++ +L LG GIL++P AF GL+ G L V A Y + +CA + +
Sbjct: 24 SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCA----ARLPR 79
Query: 121 TQMSFAEVGEAALDNGPQPLRKWANAFRIFIVISLFITYFGTCSVYTVIIARNILQI--- 177
+ SFA V + + + S+ + FG Y VI+ + QI
Sbjct: 80 GKASFAAVAKHTFPS-----------LAVVFDASIAVKCFGVAVSYLVIVGDLMPQIAPS 128
Query: 178 IQFYCGDIINERFXXXXXXXXXXXMAWIRNLKYLAPVSMIANLFMAVGLGITLY-YLVGT 236
+ + + +++++ L L S+I+ + + + I LY +++G
Sbjct: 129 LGLSSPMFLRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISLIALCYLVFIVLYHFIIGD 188
Query: 237 ---GQLQYDKIKDMLFKHPSEWPEF-FSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVL 292
G+++Y + + F + S P F F T A V+ + N + ++
Sbjct: 189 TVKGEIRYF-VPESGFGYLSVLPVFVFGFTCH-QNAFSVINEVRNFSQGFVNFTMFTAII 246
Query: 293 NKGMSGVTLVYILLGFLGYLRFGEEVQDSITLSLGDAIPAQIV--KLSIAIAVYCTFGLQ 350
+ TL+Y+L+ GYL FG +I +++ D I+ KL+I + V ++ LQ
Sbjct: 247 SS-----TLLYLLVAITGYLSFGSLASGNI-IAMYDNTSIWIIGGKLAIVVLVLFSYPLQ 300
Query: 351 FFVCIDIMWNGIKDKFTKRPELADYIMRTIMVTVCV-----SIAAAVPQISPLMGVIGAF 405
C + ++ I+ ++ Y ++T+C+ S+A + + ++ +G+
Sbjct: 301 CHPCRNSVYQAIRRSYSAHDMSDGY---HAVITLCILLFTHSLALLLSSLEMVLAFVGST 357
Query: 406 CFSILGLIAPAMI 418
+ + I P +
Sbjct: 358 GSTFISFILPGSL 370
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 30.7 bits (66), Expect = 0.45
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 240 QYDKIKDMLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGV 299
QY D++F S W E+ T + +A+G + P+ N K P ++ G L GM
Sbjct: 96 QYKPGMDVVFV--SGWEEY---TFVSKQALGFLQPINNPYKLP--LIDFVGSL--GMPSQ 146
Query: 300 TLVYILLGFLGYLRFGEEVQDSITLSLGDAIPAQIVKLSIAIAVYCTFGL--QFFVCIDI 357
T Y L +G + GE + S + Q+ K ++ + V + G +F +C+D
Sbjct: 147 T-AYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAK-AMGLHVVGSVGSDEKFKICLDS 204
Query: 358 MWNGI 362
++ +
Sbjct: 205 GYDSV 209
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.79
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 14 ELETFISPDEKNKEKIVSKY-NMTKDAESGDFDPFTERKLD 53
E+E P E+NK++I K N+ D E+ +P+T+ K D
Sbjct: 119 EIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGD 159
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 338 SIAIAVYCTFGLQFFVCIDIMWNGIKDKFTKRPELADYIMRTIMVT 383
S A + T FF ID MW F+ P++ I T+M T
Sbjct: 386 SFANLAFITIFSHFFYHIDDMWRSTLGLFSLIPQIIGIIYLTVMFT 431
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 144 ANAFRIFIVISLFITYFGTCSVYTVIIARNILQIIQFYCGDII 186
+N R+F V+ LF ++G + + + L+++ +C II
Sbjct: 552 SNILRLFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHII 594
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 407 FSILGLIAPAMIEVITYWEPGVGPGKYLIWKN-ILVVIFGTFSLV 450
FS L + A+I + Y + GPGKY+ W + +L + G ++ V
Sbjct: 132 FSHLSTLRAALIAL--YAKGYKGPGKYMTWDSFVLANVVGNYNTV 174
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 11 APQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSN 58
APQ L F +PD + I K E+ + D E L T +SN
Sbjct: 155 APQRLSDFFTPDGRRVSNIRDSLISEKRLEN-NIDQVQESALSTASSN 201
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.142 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,435
Number of Sequences: 5004
Number of extensions: 81651
Number of successful extensions: 257
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 9
length of query: 464
length of database: 2,362,478
effective HSP length: 75
effective length of query: 389
effective length of database: 1,987,178
effective search space: 773012242
effective search space used: 773012242
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
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