Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
         (148 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    27   1.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   1.6  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    24   8.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   8.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   8.3  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    24   8.3  

>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 59  PKGVQAQKVLHPDKDVFVLKIGKQTDEPNR 88
           P  +   K+ HPD D  + KI ++ D PNR
Sbjct: 222 PTVIALNKIDHPDADANISKIARKED-PNR 250


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 76  VLKIGKQTDEPNRTGNIEVELITPRAPAKMKPA 108
           VL +G  T  P  T  I + L   +AP   KPA
Sbjct: 118 VLSLGGNTSAPKSTKPISISLGGTKAPTTTKPA 150


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 9  IGAIFNGNEIPDDICEALTNRTALNSELTYSKKEA 43
          IG   NGN+ P+     L NR   +S+   S  E+
Sbjct: 43 IGVTENGNDSPEAFKNELDNRNNADSQSLQSSTES 77


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 9    IGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVL 68
            IG +F  + + + I      R  L   +T  ++E  E+LC +      +    + A +  
Sbjct: 1154 IGELFKLSMLSEKIMHECIKR--LLGNVTDPEEEEIESLCRLLMTVGVN----IDATEKG 1207

Query: 69   HPDKDVFVLKIGKQTDEPNRTGNIEVELI 97
            H   DV+VL++   T  PN    I+  L+
Sbjct: 1208 HAAMDVYVLRMETITKIPNLPSRIKFMLM 1236


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 20  DDICEALTNRTALNSEL----TYSKKEAHETLCNVCN---VTPKDAPKGVQAQKVLH--- 69
           +++ ++L+N   +++E       SK E H ++ +V +    +P   P G   ++ L    
Sbjct: 476 EELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSVNSPFLYSPSKQPSGELDEENLKLRL 535

Query: 70  PDKDVFVLKIGKQTDEPNRTGNIEVELITPRAPAKMKPATH 110
            D DV       ++ + N   N EVE +T       +P TH
Sbjct: 536 QDSDVDDEVATIRSLKQNNATNSEVETVTNDPSFSQQPGTH 576


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 20  DDICEALTNRTALNSELTYSKKEAHETL 47
           +D CE LTN+      L+Y    A++ L
Sbjct: 482 EDFCERLTNKLGECEHLSYRDTNANKVL 509


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 53  VTPKDAPKGVQAQKVLHPDKDVFV 76
           VTP++ PK +Q+Q+V+  D   FV
Sbjct: 192 VTPRE-PKNLQSQEVMDIDSSPFV 214


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,328
Number of Sequences: 5004
Number of extensions: 25791
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 7
length of query: 148
length of database: 2,362,478
effective HSP length: 67
effective length of query: 81
effective length of database: 2,027,210
effective search space: 164204010
effective search space used: 164204010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)