Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
         (148 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 31   0.52 
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.8  
SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)                 28   3.6  
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   3.6  
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  27   4.8  
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               27   4.8  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 623

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 33  NSELTYSKKEAHETLCNVCNVTPKDAPKG 61
           N+++TY  K  ++TL  + N+ PKD+  G
Sbjct: 360 NADITYQTKTTNDTLETIVNIQPKDSSGG 388


>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 71  DKDVFVLKIGKQTDEPNRTG-NIEVELITPRAPAKMKPAT 109
           D D F +KIG+  + P+R   N+ +++ TPRA     P T
Sbjct: 636 DDDQFQIKIGESFEIPDRDPFNLNLDVETPRAAEYHAPFT 675


>SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 21  DICE-ALTNRTALNSELT--------YSKKEAHETL--CNVCNVTPKDAPKGVQAQKVLH 69
           D C+ A T R +L + LT        Y  +E  + +  C  C +T KD+P+ ++    LH
Sbjct: 424 DRCDKAFTQRCSLEAHLTRVHSVVHKYGFRERRDKMFVCEDCGITFKDSPEFMKHVHELH 483

Query: 70  PDKDVFV 76
           P+ +  +
Sbjct: 484 PETEKII 490


>SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)
          Length = 697

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 11  AIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVLHP 70
           +   G E   D+ + L N   L   L  ++    E   N      KD+    Q +KV+HP
Sbjct: 201 SFLKGLEHEGDVSKLLHNNPKLGHLLIVNEGSGEEERKNASQAARKDSKADNQQRKVVHP 260

Query: 71  D 71
           +
Sbjct: 261 N 261


>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 14  NGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVLHPDKD 73
           N +E+ DD+ E  +  T  N +  YS K+    +C  C+          Q  + LH D+ 
Sbjct: 73  NESEVNDDLEERESTGTPDNVDERYSIKKNKPFMCERCDEEFDGMASWRQHCRNLHGDQK 132

Query: 74  VFVLKI-GKQTDEPNRTGNIEVELITPRAP 102
            +   + GK    P+ + NI + L +   P
Sbjct: 133 YYKCNVCGKLFSHPS-SRNIHLRLHSGEKP 161


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 15  GNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVLHPDKDV 74
           G E    +    T  T   SE+    +E  + L  V    P +  +  +A+ V+  +  +
Sbjct: 184 GQEATPAVPWGYTEPTHPTSEMPIMGQEESQELQEVIIEKPAET-QASEAEVVVEVESQL 242

Query: 75  FVLKIGKQTDEPNRTGNIEVELITPRAPAKMKPATHCCKLIQ 116
                    D  + T ++  E  TP +P + KP T    +IQ
Sbjct: 243 SFQDPAPADDTASATEDVPQEEPTPESPKEEKPRTWAAMVIQ 284


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 23  CEALTNRTALNSELTYSKKEAHETLCNVCNVT 54
           C +     + + +L Y +K  H  +CN CN T
Sbjct: 230 CASCQTEFSRSKDLKYHEKGCHPCVCNECNET 261


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 33   NSELTYSKKEAHETLCNVCNVTPKDAPKG 61
            N+++TY    A E L  + ++ PKD+  G
Sbjct: 4803 NADITYQSNTAKEVLDTIMSIQPKDSGGG 4831


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)

Query: 2    QRKPYEEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHET 46
            QRK  E  G +    EI DDI      R   +S L    + AHET
Sbjct: 1191 QRKVDETFGDLHGVTEIADDIIIYGKTRAEHDSNLKAVMQRAHET 1235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,227,311
Number of Sequences: 59808
Number of extensions: 218749
Number of successful extensions: 441
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 9
length of query: 148
length of database: 16,821,457
effective HSP length: 76
effective length of query: 72
effective length of database: 12,276,049
effective search space: 883875528
effective search space used: 883875528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)