GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
         (148 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   7.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   7.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   7.8  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 100 RAPAKMKPATHCCKLIQCEEED 121
           R    ++P  + CKL+ C++ D
Sbjct: 4   RGLGAIQPGVNRCKLLSCKDFD 25


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 78  KIGKQTDEPNRTGNIEVELITP 99
           K+  +  EP  +GN+ V + TP
Sbjct: 486 KLSPKVLEPLYSGNLAVSVATP 507


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 44  HETLCNVCNV 53
           H  LCN+C V
Sbjct: 218 HNELCNLCQV 227


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 115 IQCEEEDIPC 124
           IQC   D+PC
Sbjct: 612 IQCPNADLPC 621


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 115 IQCEEEDIPC 124
           IQC   D+PC
Sbjct: 612 IQCPNADLPC 621


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,370
Number of Sequences: 317
Number of extensions: 1323
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 114,650
effective HSP length: 52
effective length of query: 96
effective length of database: 98,166
effective search space:  9423936
effective search space used:  9423936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)