Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
(148 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 27 6.2
11_06_0289 - 21969248-21973516 27 8.2
11_06_0185 + 21018045-21022307 27 8.2
11_04_0178 - 14552650-14553293,14557492-14557603 27 8.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 8.2
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 8.2
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 8.2
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 27 8.2
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 2 QRKPYE--EIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAP 59
QRKP + + + + E+ + R A ++EL Y H +C+V P +A
Sbjct: 254 QRKPAQLARLHRVIHSEEVQEGPLSHEVYREASHAELIYETATTHSNRRIMCSVAP-EAV 312
Query: 60 KGVQAQKVLHPDK 72
V +++ H ++
Sbjct: 313 GSVDKRRIEHDNQ 325
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 FNGNEIPDDICEALTNRTALN 33
FNG +P+D+ EA+ N ++N
Sbjct: 1396 FNGYSVPNDVEEAIKNNKSIN 1416
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 FNGNEIPDDICEALTNRTALN 33
FNG +P+D+ EA+ N ++N
Sbjct: 1394 FNGYSVPNDVEEAIKNNKSIN 1414
>11_04_0178 - 14552650-14553293,14557492-14557603
Length = 251
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 81 KQTDEPNRTGNIEVELITPRAPAKMKP 107
KQ EP T + + + PR P ++KP
Sbjct: 178 KQEPEPGETDELPIMELPPRPPLELKP 204
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 14 NGNEIP--DDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVLHPD 71
NGN P D IC+ + + +E +E H+ + + NV P+ Q V HPD
Sbjct: 2380 NGNVCPMNDLICQQSADVADVRTE-----EEMHQ-IADDMNVIPQSNEDTADRQHVAHPD 2433
Query: 72 KD 73
+D
Sbjct: 2434 RD 2435
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1 MQRKPYEEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAH 44
++ KP E+I +G E+ DDI A+ N NS L + E H
Sbjct: 669 LEFKPSEKIKLFCSGKELQDDISLAMQN-VRPNSILHVVRTEIH 711
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 50 VCNVTPKDAPKGVQAQKVLHPDKDVFVLKIGKQT----DEPNRTGNIEVELITPRAPAKM 105
+CN + K V A +L P+K++F+ + K + ++ N N +++T P K+
Sbjct: 228 ICNSRSYQSNKLVDAPDMLSPEKELFLKTLQKPSPHTLEKENTQNNQNRQVVTKLEPRKI 287
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 32 LNSELTYSKKEAHETL-CNVCNVTPKDAPKGVQAQKVLHPDKD 73
++ EL + +K E L CN+ V + PK V+ V PDKD
Sbjct: 191 IDKELKHEEKHCVEELQCNIV-VMKRSQPKVVRLNLVGSPDKD 232
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,878
Number of Sequences: 37544
Number of extensions: 167058
Number of successful extensions: 341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 8
length of query: 148
length of database: 14,793,348
effective HSP length: 76
effective length of query: 72
effective length of database: 11,940,004
effective search space: 859680288
effective search space used: 859680288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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