GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
         (148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 19/85 (22%), Positives = 30/85 (35%)

Query: 5   PYEEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQA 64
           P EEI       E+PDD+ + +     L       K +A    C+  N     A +    
Sbjct: 546 PIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSARNKQGHSARRSGDV 605

Query: 65  QKVLHPDKDVFVLKIGKQTDEPNRT 89
             ++ P  + F  + G       RT
Sbjct: 606 AVIVPPIIEPFTFQEGLSEGMRTRT 630


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 10  GAIFNGNE-----IPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTP 55
           G++ NG+       P+        R  +   ++Y   E   T CN    TP
Sbjct: 312 GSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTP 362


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,903
Number of Sequences: 429
Number of extensions: 1580
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 140,377
effective HSP length: 52
effective length of query: 96
effective length of database: 118,069
effective search space: 11334624
effective search space used: 11334624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)