Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000713-TA|BGIBMGA000713-PA|undefined
(148 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52560.1 68418.m06527 UDP-N-acetylglucosamine pyrophosphoryla... 31 0.42
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 31 0.42
At5g37010.1 68418.m04438 expressed protein 29 1.7
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 29 1.7
At1g32740.1 68414.m04037 expressed protein 29 1.7
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 28 2.3
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 27 3.9
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ... 27 3.9
At3g62140.1 68416.m06982 expressed protein ; expression support... 27 3.9
At3g10440.1 68416.m01252 hypothetical protein 27 3.9
At5g28320.1 68418.m03438 expressed protein This is likely a pseu... 27 6.9
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 26 9.1
>At5g52560.1 68418.m06527 UDP-N-acetylglucosamine
pyrophosphorylase-related contains weak similarity to
UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
(Swiss-Prot:O74933) [Candida albicans]
Length = 614
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 76 VLKIGKQTDEPNRTGNIEVELITPRAPAKMKPATHCCKLIQCEEEDIPCCVP 127
+L++G DE +TG E + P+ K A ++C +D P +P
Sbjct: 373 ILELGPYKDELQKTGGAIKEFVNPKYKDSTKTAFKSSTRLECMMQDYPKTLP 424
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 30.7 bits (66), Expect = 0.42
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 99 PRAPAKMKPATHCCKLIQCEEEDIPCCV 126
P P+ +KP T C K C E + CC+
Sbjct: 364 PSPPSPIKPPTTCDKYFSCPESNTCCCL 391
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 28 NRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQKVLHPDKDVFVLKIGKQTDEPN 87
N++A+++ L K EA E V P++ + +Q P K+VFV+K + ++ +
Sbjct: 30 NKSAIDTPL---KLEAQEKKIQVEESKPRNEEEKIQEDNNSKPRKEVFVIKHRRSHEKSS 86
Query: 88 RT 89
+T
Sbjct: 87 KT 88
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 99 PRAPAKMKPATHCCKLIQCEEEDIPCCV 126
P P+ +KP T C C E + CC+
Sbjct: 363 PSPPSPIKPPTQCDSYYTCPESNTCCCL 390
>At1g32740.1 68414.m04037 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 63 QAQKVLHPDKDVFVLKIGKQTDEPNRTGNIEVELITPRAPAKMKPATHCCKLIQCEEEDI 122
QAQK+ H +DVF I +Q++E + + + E + K K H L+ EE +
Sbjct: 105 QAQKISHLSEDVFAAHINRQSEELDEFLHAQAEELRRTLAEKRK--MHYKALLGAVEESL 162
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 42 EAHETLCNVCNVTPKDA 58
EA +C +CNV PKDA
Sbjct: 913 EASLAICGICNVAPKDA 929
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 27.5 bits (58), Expect = 3.9
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 41 KEAHETLCNVCNVTPKDAPKGVQAQKVLHPDKDVFVLKIGKQTDEPNRTGNIEVELITPR 100
KEA+ L TP P + +K L K K G TD P RTG+ + R
Sbjct: 14 KEANPELFPKAEPTPPKDPNKKKKKKSLFKKK-----KPGSSTDRPQRTGSSTRHPL--R 66
Query: 101 APAKMKPATHC 111
P MKP C
Sbjct: 67 VPG-MKPGEGC 76
>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 507
Score = 27.5 bits (58), Expect = 3.9
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 3 RKPYEEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGV 62
RKP E+ I + +E P + + +T L+S+L S + NV + PK K
Sbjct: 134 RKP--EVLIISSCDETP---VKQIKKKTTLSSKLKPSPDLGSRSSENVDALKPKVLKKSY 188
Query: 63 QA-----QKVLHPD---KDVFVLKIGKQTDEPNRTGNIEVELITPRAPAKMKPAT 109
A KV H V K+GK+ D + G ++ ++ R +K P T
Sbjct: 189 SALTTSKPKVNHEKVVASPVLKPKMGKRNDGKDEDGKVKKGTVSSRVASKKAPVT 243
>At3g62140.1 68416.m06982 expressed protein ; expression supported
by MPSS
Length = 241
Score = 27.5 bits (58), Expect = 3.9
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 28 NRTALNSELTYSKKEAHETLCNVCNVTPKDAPKGVQAQK-VLHPDKDVFVLKIGKQTDEP 86
+ T +L SK+E L N + ++ V A+ +LH K+ + T E
Sbjct: 99 DETEFLDKLEMSKREYERQLANEEDEQLRNFQAAVAARSAILHEPKEAALPPPAPVTKEQ 158
Query: 87 NRTGNIEVELITPRAPAKMKPATHCCKLIQCEEEDIP 123
G +A K+KP K + EE++IP
Sbjct: 159 KPIGKRNPATRPFKAIIKVKPQPKKAKATEKEEKEIP 195
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 7 EEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHE 45
+E+G I N N +PDD A R + + T SK EA E
Sbjct: 352 QELGVIQNLNGLPDDQEIAAKARCSAREQSTGSKPEAVE 390
>At5g28320.1 68418.m03438 expressed protein This is likely a
pseudogene.
Length = 967
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 6 YEEIGAIFNGNEIPDDICEALTNRTALNSELTYSKKEAHETLCNVCNVTPKD 57
YEE G + + +E+ L + +++S+L Y+KK A E + N VT KD
Sbjct: 133 YEEQGIVVDEDEVLSRRRSGLDDLESVSSKLVYAKKLA-EQMENGEYVTHKD 183
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 27 TNRTALNSELTYSKKEAHETLCNVCNV-TPKDAPKGVQAQKVLHPDK 72
T LN + SK+ ET C+V NV + K+A V + + L DK
Sbjct: 335 TKSEDLNHDQLSSKQSGGETACDVENVSSSKEAIVDVTSSEALSVDK 381
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,701
Number of Sequences: 28952
Number of extensions: 139672
Number of successful extensions: 292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 12
length of query: 148
length of database: 12,070,560
effective HSP length: 75
effective length of query: 73
effective length of database: 9,899,160
effective search space: 722638680
effective search space used: 722638680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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