Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   2.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   3.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   3.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   3.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   3.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   3.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    24   3.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   3.5  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   8.1  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 337 CPEEKDHYNSMPCEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVP 382
           C E K   ++ PC+D  + C   G  +      +      +C+++P
Sbjct: 3   CSESKAICDNPPCDDEVESCIAVGVGSGRNSAPSICGEHGHCVNLP 48


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 281 MASMNIVPYHMSPYGHPYQFDL 302


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 281 MASMNIVPYHMSPYGHPYQFDL 302


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 281 MASMNIVPYHMSPYGHPYQFDL 302


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 237 MASMNIVPYHMSPYGHPYQFDL 258


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 281 MASMNIVPYHMSPYGHPYQFDL 302


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
          protein.
          Length = 100

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66 MTTETVIPHHQDVFPRSYQYDL 87
          M +  ++P+H   +   YQ+DL
Sbjct: 69 MASMNIVPYHMSPYGHPYQFDL 90


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 66  MTTETVIPHHQDVFPRSYQYDL 87
           M +  ++P+H   +   YQ+DL
Sbjct: 281 MASMNIVPYHMSPYGHPYQFDL 302


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 232 VQARKKFLEDPSNVSYEALKDAFRIVG--SDGVEA-----GEIIMFLRISCFGKLIITRF 284
           V  + K ++  S +SYE L +  R+V    D +EA     G   + +  SC   L++T +
Sbjct: 228 VNKQPKVIQGKSALSYERLNEFMRLVEEIEDVIEAINGFYGVHTLLILFSCLLHLVVTPY 287


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 7/141 (4%)

Query: 630 VQLDEKRREELKVSLASEHIKNGCRLALIAYQRARLYAVEAYQFKNMFDKIGKKDAKSTQ 689
           V +  KRR EL+    +    NG     +A    ++  +E     N+   +   +  S  
Sbjct: 456 VDVSTKRRTELEDLTPTFDFTNGWANGTLAKLSPKV--LEPLYSGNLAVSVATPNDTSL- 512

Query: 690 VNGNLKS---ALKKNLPCPWACELVPTNVPNATKAQTVLHPRKDVFV-LKVAKIGPNGDR 745
           V G L +   A  ++ P P+  +     +P +      L+   D  +   V+  G   DR
Sbjct: 513 VRGRLVAKPVADARDAPAPFLLKRENYTLPASAVGIAWLYVDNDCCIRYDVSLSGLGSDR 572

Query: 746 RCKMELELVTPKGPEKQALTR 766
           R ++ LEL+    P    +TR
Sbjct: 573 RLELFLELLPMLAPGAPVMTR 593


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,098
Number of Sequences: 317
Number of extensions: 7996
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 791
length of database: 114,650
effective HSP length: 62
effective length of query: 729
effective length of database: 94,996
effective search space: 69252084
effective search space used: 69252084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)