Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)                  36   0.095
SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.17 
SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)                33   0.89 
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         33   0.89 
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        32   1.6  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   30   8.3  

>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
          Length = 831

 Score = 36.3 bits (80), Expect = 0.095
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 303 RSCNPRKDFQTTQDPCACGTANAFKKKGITELAACPEEKDHYNSMPCED-PDDPCYCSGP 361
           R+C  R+D  +  + C C   +  K K +T++  C     ++ S  CE+     C  S  
Sbjct: 371 RACKKREDEASYMESCCCKVVSKEKDKILTQMDPCGTNDTYFKSDRCEEIKTSACVTSEN 430

Query: 362 KTATKQQMACRN 373
             +  +   CRN
Sbjct: 431 NPSGTRDTYCRN 442


>SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 35.5 bits (78), Expect = 0.17
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 177 FNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATIDMTKEFVQ--- 233
           FN GKSCLF +   D+++ +   PI V +    P      K++ G  TI + +   +   
Sbjct: 68  FNKGKSCLFRMNVEDLHQKLQVTPIYVMLVDVWP---KKPKLI-GSTTIPLKRSIDRIID 123

Query: 234 -ARKKFLEDPSNVSYEALKDAFRIVGSDGVEAGEIIMFLRISCFGKLII 281
             +K  +  PS    E   D F ++GS   + G+ ++ +R+   G  +I
Sbjct: 124 DVKKNGVSVPSFSKEENKFDIFNLMGS---KVGKAVLGVRLLSLGGSLI 169


>SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)
          Length = 227

 Score = 33.1 bits (72), Expect = 0.89
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 401 LKIKVPANASIIKKISQTHCAMQCPYTKGADGGPCEPPCGKNQISLALPSEAICCHGAQP 460
           L IK   ++S    I+   C  QC  TK      CE   G+N+ ++      +C  G  P
Sbjct: 13  LAIKAVTSSSRCSAINGDKCIQQCNGTK------CECT-GRNRDAIYTGCTQLC--GRHP 63

Query: 461 AGTQFTCTTEGCMQTSKHG 479
             T  TC+TE C+Q S HG
Sbjct: 64  CNT-LTCSTENCIQ-SCHG 80


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 33.1 bits (72), Expect = 0.89
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 100 GLKQKHSNKLKMAKQDDGLFLLEVLVDKIVFAKSPCFSDKDFR 142
           GLKQ H N+ ++A   +G+ LL+    KI+   +  FS+  FR
Sbjct: 83  GLKQPHDNRYQLASSAEGVKLLDGEGFKILLTNTSVFSETRFR 125


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 330 GITELAACPEEKDHYNSMPCEDPDDPCYCSGPKTATKQQMACRNTDQ 376
           G + +  CP ++ H+NS      D    CSGP+T +     CR + Q
Sbjct: 219 GESNIFDCPMKQMHWNSECYHVNDAGVICSGPQTGSPMSNTCRRSCQ 265


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 1   METTNHPTDPRSNISKLGSYDPEKPTIDELPGPVI 35
           +E  NHP  P+  + + G   P+ P +D    PV+
Sbjct: 320 LENNNHPDMPKPELREFGVQTPDIPMVDANMSPVL 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,935,051
Number of Sequences: 59808
Number of extensions: 1137010
Number of successful extensions: 2361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 7
length of query: 791
length of database: 16,821,457
effective HSP length: 88
effective length of query: 703
effective length of database: 11,558,353
effective search space: 8125522159
effective search space used: 8125522159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)