GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    36   0.022
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    32   0.36 
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    31   0.47 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    30   1.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   3.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   7.7  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 5   NHPTDPRSNISKLGSYDPEKPTIDELPGPVIERMVQKDKAFWVDKPGSNAYVLHDAYNSY 64
           +HP D  ++++ L  ++ E+  ID+L   V+E   ++++A   D PG N     D     
Sbjct: 436 DHPLDDDNDVNDLLDFETEREDIDDLTDEVME--TEENEAAEADYPGVNRNTRQDDVQDI 493

Query: 65  GMTTET 70
            M TE+
Sbjct: 494 SMETES 499


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 186 SLKEADINKAMSKFPIKVTVYK----SLPCGCLP--TKIVMGEATIDMTKEFVQARKKFL 239
           +L+ A  NK ++K PI + +Y     +L    LP  TKI +G+   D+  +      +++
Sbjct: 139 TLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYI 198

Query: 240 EDPSNVSYEALKDAFRIVGSDGVE 263
             P+++        F IV S+G++
Sbjct: 199 SRPNSIILAVSPANFDIVNSEGLK 222


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 189 EADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID-MTKEFVQARKKFLEDPSN--V 245
           E D  K M+K  +  T + SL  GCL   + + +A +D M K  +Q  +   +D  N   
Sbjct: 58  EEDYAKRMAK--LSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115

Query: 246 SYEA-LKDAFRIVGSDGVE 263
            Y A LKD  +++ S G+E
Sbjct: 116 RYAASLKDKKKMIVS-GIE 133


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 212 GCLPTKIVMGEATIDMTKEFVQARKKFLEDPSNVSYEALKDAFRIVGSD 260
           GCL     +  AT+D+ K        FL+   N + EA+++AF ++ +D
Sbjct: 289 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFSLITND 337


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 273 ISCFGKLIITRFQGAGPPNLSSAGNSSVVDRSCNPRKDFQ 312
           +SCF  L+ TR  G G  NL+SA    ++D   NP +D Q
Sbjct: 940 LSCF--LLSTRAGGVGI-NLASADTVIILDPDFNPHQDMQ 976


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 694 LKSALKKNLPCPWACELVPTNVPNAT-KAQTVLHPRKDVFVLKVAKIGPNGDRRCK 748
           LK  +  +  CPWA  L   N PN   +A  +   R+  FV KV       D  C+
Sbjct: 85  LKEHITHSPSCPWAYILSSKNNPNQNPQAAALTKCREQTFVDKVWPYTNRPDYHCE 140


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,346
Number of Sequences: 5004
Number of extensions: 147605
Number of successful extensions: 288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 7
length of query: 791
length of database: 2,362,478
effective HSP length: 78
effective length of query: 713
effective length of database: 1,972,166
effective search space: 1406154358
effective search space used: 1406154358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)