GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244...    32   1.5  
08_01_0914 + 9010613-9013316,9013537-9013748                           30   8.2  
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631...    30   8.2  

>10_08_0753 +
           20324011-20324113,20324210-20324231,20324344-20324400,
           20324704-20324785,20324903-20324998,20325265-20325389,
           20325484-20325502,20325598-20325744
          Length = 216

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 434 PCEPPCGKNQI-SLALPSEAICCHGAQPAGTQFTCTTEGCMQTSK 477
           PC   CG++    + L +E  CC G   A T+F    E  +QT++
Sbjct: 70  PCSGRCGESNCPEVCLATEVFCCFGNSVASTRFLLQDEFNIQTTQ 114


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 211 CGCLPTKIVMGEATIDMTKEFVQARKKFLEDPSNVSYE-ALKDAFRIVGSDGVEAGEIIM 269
           C   P+ I++ +  +    +F  AR   + +P   S    +K     V  +     ++ M
Sbjct: 852 CDIKPSNILLDDDLVAHVTDFGLARIMNIAEPFKESSSFVIKGTIGYVAPEYGSGSQVSM 911

Query: 270 FLRISCFGKLIITRFQGAGPPNLSSAGNSSVVD 302
              I  +G L++  F G  P +  + G +S+VD
Sbjct: 912 DGDIYSYGVLLLEMFTGRRPTDNFNYGTTSLVD 944


>03_03_0016 -
           13761007-13761489,13761929-13762096,13763086-13763130,
           13763380-13763447,13763532-13763586,13763659-13763814,
           13763904-13764002,13764792-13764872,13765513-13765636,
           13765938-13766032,13766434-13766560,13766768-13766871,
           13767278-13767359,13768012-13768049
          Length = 574

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 64  YGMTTET--VIPHHQDVFPRSYQYDLDCIKYRRDH 96
           +G  TE   ++PHH D    SY  D + IK+  DH
Sbjct: 228 FGHATEDDFILPHHSDKIYESYVGDKNIIKFDGDH 262


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,287,783
Number of Sequences: 37544
Number of extensions: 997267
Number of successful extensions: 1908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1908
Number of HSP's gapped (non-prelim): 3
length of query: 791
length of database: 14,793,348
effective HSP length: 88
effective length of query: 703
effective length of database: 11,489,476
effective search space: 8077101628
effective search space used: 8077101628
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)