GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    33   1.0  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    33   1.0  
Z78200-9|CAB01583.2|  368|Caenorhabditis elegans Hypothetical pr...    32   1.8  
Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical pr...    32   1.8  
U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    30   5.5  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    30   7.3  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    30   7.3  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    30   7.3  
Z81062-5|CAB02944.1|  143|Caenorhabditis elegans Hypothetical pr...    29   9.7  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   9.7  

>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 167 VKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID 226
           +K+   + +T +  K   +S KE   N  +    ++     S+    LP+K   G+  ID
Sbjct: 63  LKASVTYTQTLSLVKYNNYSQKETVKNSEVVYSSLQKVYTSSIALSELPSKASNGDKIID 122

Query: 227 MTKEFVQARKKFLEDPSNVS--YEALKDAFRIVGS 259
           M   F ++ K   ED  ++   YE LK     V S
Sbjct: 123 MLNSFEKSIKSLTEDSPSIGTLYELLKSRHLRVSS 157


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 32.7 bits (71), Expect = 1.0
 Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 11/184 (5%)

Query: 293 SSAGNSSVVDRSCNPRKDFQTTQDPCACGTANAFKKKGITELAACPEEKDHYNSMPCEDP 352
           ++AG +SV    CNP       ++    G  + FK      L   PE +D  +   C D 
Sbjct: 226 AAAGKTSVTIAPCNPHSSDTPKREEDLLGKQHDFKCSVRGFLGDEPEPQDVSDLYDCIDN 285

Query: 353 DDPCYCSGPKTATKQ-QMACRNTDQYCLHVPKGRSKQFEEI-----GTNLGGNELKIKVP 406
                  G  T++    + C N    C+   KG S     +      + +G  +  +  P
Sbjct: 286 SKFWKDQGMDTSSHPIGVCCMNRAFTCMQPKKGESDALGSVPRWYFNSVMGSCQQFLFDP 345

Query: 407 ANASIIKKISQT--HCAMQCPYTKGADGGPCEPPCGKNQISLALPSEAICCHGAQPAGTQ 464
             + +     +T  HC   C  T    G P       +  S  LP     C  A P    
Sbjct: 346 TGSEVSPNNFETLDHCESYCKDT-CPRGNPAYLSTKGSPNSARLPQTG--CSTANPCTDP 402

Query: 465 FTCT 468
           F CT
Sbjct: 403 FVCT 406


>Z78200-9|CAB01583.2|  368|Caenorhabditis elegans Hypothetical
           protein T04H1.6 protein.
          Length = 368

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 339 EEKDHYNSMP-CEDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPK 383
           E  +H N++  C + D   +C+   T T+ + AC    Q C+HV K
Sbjct: 182 ENCNHKNAIKFCPEYDHVMHCTIKDTCTENEFACCAMPQSCIHVSK 227


>Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical
           protein M28.4 protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 161 DPGACVVKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVM 220
           D     +KSG   V    +  +     K A     + + P+   + K+LP     T+I+ 
Sbjct: 244 DQNQITIKSGNALVNRLRNMNTLDMDCK-AHAKNLVKEIPV---LEKTLPVSAAATRIIK 299

Query: 221 GEATIDMTKEFVQARKKFLEDPSNVSYEALKDAFRIV 257
           G   +      ++  K  ++  SN + +A+K A +IV
Sbjct: 300 GSMQLQRINSQIKDIKDHIQTESNRALKAIKQAQKIV 336


>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 64  YGMTTETVIPHHQDVFPRSYQYDLDCIKYRR 94
           YGM   T++P+HQ   P +Y Y+ + ++ ++
Sbjct: 174 YGMINRTIVPYHQIWIPDTYLYNSEELEQKK 204


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 62  NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 95
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 62  NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 95
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 62  NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 95
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>Z81062-5|CAB02944.1|  143|Caenorhabditis elegans Hypothetical
           protein F15A4.6 protein.
          Length = 143

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 350 EDPDDPCYCSGPKTATKQQMACRNTDQYCLHVPKGRSKQFEEIGTNLGGNELKI-KVPAN 408
           E P    YC+  +  T     C  T  +C   P   S   + +  + G +E    K   N
Sbjct: 67  ECPGLKSYCNNSQYKTLMTQQCAKTCGFCTGTP---STCADLVNPSTGRSECAANKSRCN 123

Query: 409 ASIIKKISQTHCAMQCPYTK 428
            S+ + + +T C   C Y K
Sbjct: 124 DSVYRDMMKTQCPKTCGYCK 143


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 291 NLSSAGNSSVVDRSCNPRKDFQTTQDPCACGTA---NAFKKKGITELAACPEEKDHYNSM 347
           N SS  NS     +C     F++    C+C      + + KK      +CP+    +  +
Sbjct: 411 NCSSTRNSCDQTWNCQRHAGFES----CSCDDGYHLSPYDKKTCLRSPSCPKANCSHFCI 466

Query: 348 PCEDPDDPCYCSGPKTATKQQMACRNTD 375
              D    C+C+     ++ Q  CR  D
Sbjct: 467 DRRDVGHQCFCAPGYILSENQKDCRRND 494


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,929
Number of Sequences: 27539
Number of extensions: 878393
Number of successful extensions: 1841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 11
length of query: 791
length of database: 12,573,161
effective HSP length: 87
effective length of query: 704
effective length of database: 10,177,268
effective search space: 7164796672
effective search space used: 7164796672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)