GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   9.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   9.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 2/144 (1%)

Query: 559 IPSDSCGMGHKQRAHFNFNSDGV-GDISRDEPGQLMPTNVEGVALHHPXXXXXXXXXXXX 617
           +P D+ G   K  +        V GD     P        + + L+HP            
Sbjct: 303 LPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLD 362

Query: 618 XXXXXXXXXYDPVQLDEKRREELKVSLASEHIKNGCRLALIAYQRARLYAVEAYQFKNMF 677
                    +  ++    RR         + IK+G   A++  Q  +   VEA+Q     
Sbjct: 363 CHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSG-DAAIVMLQPTKPMCVEAFQEFPPL 421

Query: 678 DKIGKKDAKSTQVNGNLKSALKKN 701
            +   +D + T   G +KS   K+
Sbjct: 422 GRFAVRDMRQTVAVGVIKSVTFKD 445


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 703 PCPWACEL 710
           PCPW CEL
Sbjct: 234 PCPWICEL 241


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 17/95 (17%), Positives = 32/95 (33%)

Query: 629 PVQLDEKRREELKVSLASEHIKNGCRLALIAYQRARLYAVEAYQFKNMFDKIGKKDAKST 688
           P+        E +++     I     + L+     ++Y +     KN+  K+   D    
Sbjct: 724 PIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKK 783

Query: 689 QVNGNLKSALKKNLPCPWACELVPTNVPNATKAQT 723
           Q +    S++ K   C    E +P         QT
Sbjct: 784 QGSSAGTSSITKYTGCELTSESMPLQSALTAAVQT 818


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 347 MPCEDPDDPCYCSGPKTATKQQMACR 372
           M  + P+ P YC+    AT     CR
Sbjct: 1   MEFKQPNRPSYCTWELNATNSPHTCR 26


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 17/95 (17%), Positives = 32/95 (33%)

Query: 629 PVQLDEKRREELKVSLASEHIKNGCRLALIAYQRARLYAVEAYQFKNMFDKIGKKDAKST 688
           P+        E +++     I     + L+     ++Y +     KN+  K+   D    
Sbjct: 814 PIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKK 873

Query: 689 QVNGNLKSALKKNLPCPWACELVPTNVPNATKAQT 723
           Q +    S++ K   C    E +P         QT
Sbjct: 874 QGSSAGTSSITKYTGCELTSESMPLQSALTAAVQT 908


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,823
Number of Sequences: 429
Number of extensions: 9281
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 791
length of database: 140,377
effective HSP length: 63
effective length of query: 728
effective length of database: 113,350
effective search space: 82518800
effective search space used: 82518800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)