GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000712-TA|BGIBMGA000712-PA|undefined
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family...    32   1.7  
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family...    32   1.7  
At1g63830.2 68414.m07224 proline-rich family protein contains pr...    31   3.0  
At1g63830.1 68414.m07223 proline-rich family protein contains pr...    31   3.0  
At4g27620.2 68417.m03970 expressed protein                             30   5.2  
At4g27620.1 68417.m03969 expressed protein                             30   5.2  
At3g54650.1 68416.m06046 F-box family protein (FBL17) contains s...    30   6.9  
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    30   6.9  
At2g41930.1 68415.m05187 protein kinase family protein contains ...    30   6.9  
At3g60570.1 68416.m06776 beta-expansin, putative (EXPB5) conatin...    29   9.1  

>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 199

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 434 PCEPPCGKNQI-SLALPSEAICCHGAQPAGTQFTCTTEGCMQTSK 477
           PC   CG+ +   L L +E  CC     A T+F    E  +QT+K
Sbjct: 12  PCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTK 56


>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 255

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 434 PCEPPCGKNQI-SLALPSEAICCHGAQPAGTQFTCTTEGCMQTSK 477
           PC   CG+ +   L L +E  CC     A T+F    E  +QT+K
Sbjct: 68  PCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTK 112


>At1g63830.2 68414.m07224 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 426 YTKGADGGPCEPPCGKNQI-SLALPSEAICCHGAQPAGTQFTCTTEGCMQTSK 477
           YT  A   PC   CG+++   L L +E   C G   A T+F    E  +QT++
Sbjct: 62  YTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQ 114


>At1g63830.1 68414.m07223 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 426 YTKGADGGPCEPPCGKNQI-SLALPSEAICCHGAQPAGTQFTCTTEGCMQTSK 477
           YT  A   PC   CG+++   L L +E   C G   A T+F    E  +QT++
Sbjct: 62  YTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQ 114


>At4g27620.2 68417.m03970 expressed protein
          Length = 325

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 284 FQGAGPPNLSSAGNSSVVDRSCNPRKDFQTTQD--PCACGTANAFKKKGITELAACPEEK 341
           F+G GP  +  AG + +   S       + + D  P         K  G T+        
Sbjct: 17  FRGEGPNWILIAGGALLSTLSIRFGYKLKQSIDSKPPHSNATGGLKPNGTTDRGRFKGCC 76

Query: 342 DHYNSMPCEDPDDPCYCSGPKT-------ATKQQMACRNTDQYCLHVPKGRSKQFEEIGT 394
            H N+ PCE  +D C+   P T       AT +QMA  +T    + VP   S   +E   
Sbjct: 77  LHSNASPCERNNDCCFHCTPGTENGEGNHATNEQMAESSTSLPLVTVP--ASSYSKESAV 134

Query: 395 NLGGNELKIKVPANA 409
             G +   ++VP  A
Sbjct: 135 VWGSSPDHLEVPMKA 149


>At4g27620.1 68417.m03969 expressed protein
          Length = 325

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 284 FQGAGPPNLSSAGNSSVVDRSCNPRKDFQTTQD--PCACGTANAFKKKGITELAACPEEK 341
           F+G GP  +  AG + +   S       + + D  P         K  G T+        
Sbjct: 17  FRGEGPNWILIAGGALLSTLSIRFGYKLKQSIDSKPPHSNATGGLKPNGTTDRGRFKGCC 76

Query: 342 DHYNSMPCEDPDDPCYCSGPKT-------ATKQQMACRNTDQYCLHVPKGRSKQFEEIGT 394
            H N+ PCE  +D C+   P T       AT +QMA  +T    + VP   S   +E   
Sbjct: 77  LHSNASPCERNNDCCFHCTPGTENGEGNHATNEQMAESSTSLPLVTVP--ASSYSKESAV 134

Query: 395 NLGGNELKIKVPANA 409
             G +   ++VP  A
Sbjct: 135 VWGSSPDHLEVPMKA 149


>At3g54650.1 68416.m06046 F-box family protein (FBL17) contains
           similarity to F-box protein FBL2 GI:6010699 from [Rattus
           norvegicus]
          Length = 593

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 137 SDKDFRT--CVNIECPSVEPLEICDDDPGACVVKSGGPFVKTFNSGKSCLFSLK 188
           SD D  T  C+   CP++E LEI     GA V +  G  +  F + K  L SLK
Sbjct: 208 SDFDATTLACIAFSCPNLEVLEITTS--GAAVNRISGDELSRFVANKRGLTSLK 259


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 104 KHSNKLKMAKQDDGLFLLEVLVDKIVFAKSPCFSDKDFRTCVNIECPSVEPLEIC 158
           KH ++ K  K D     LEV+   +  AK+PC    D R    ++ P +  +  C
Sbjct: 795 KHGSRFKETKTD-----LEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844


>At2g41930.1 68415.m05187 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 347

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 280 IITRFQGAGPPNLSSAGNSSVVDRSCNPRKDFQTTQDPCACGTANAFKKKGITELA 335
           I++  +G  P  +   GNS V    CN +K +  + +  A GT   F K+  T+L+
Sbjct: 49  ILSELRGC-PCIVQLCGNSLVQGIDCNGKKVYMMSMEYAAAGTLTNFIKRNRTKLS 103


>At3g60570.1 68416.m06776 beta-expansin, putative (EXPB5) conatins
           similarity to beta-expansin GI:8118428 from [Oryza
           sativa]; beta-expansin gene family, PMID:11641069
          Length = 252

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 162 PGACVVKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGC 213
           P  C+V +GGP    F  GK C    +    +   +K PIKV +    P GC
Sbjct: 65  PYRCMVSAGGP--SLFKDGKGCGACYRLKCDHPLCTKKPIKVMISDECP-GC 113


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,503
Number of Sequences: 28952
Number of extensions: 813585
Number of successful extensions: 1644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 10
length of query: 791
length of database: 12,070,560
effective HSP length: 87
effective length of query: 704
effective length of database: 9,551,736
effective search space: 6724422144
effective search space used: 6724422144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)