Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000711-TA|BGIBMGA000711-PA|IPR001478|PDZ/DHR/GLGF,
IPR011511|Variant SH3, IPR008144|Guanylate kinase, IPR001452|Src
homology-3, IPR008145|Guanylate kinase/L-type calcium channel region
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 103 2e-22
03_02_0825 + 11565701-11565862,11565963-11566154,11567674-115677... 42 0.001
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 38 0.015
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 36 0.061
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 29 5.3
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 29 9.2
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 103 bits (248), Expect = 2e-22
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 216 RPIVLIGAPGVGRNELRRRLVATDPEKYITPIPYTSRPIKSSEQNGKDYVFVTREKMEQD 275
+PIV+ G GVG+ L +L+ P K+ + +T+R + E +G Y F R K+E++
Sbjct: 175 KPIVISGPSGVGKGTLIAKLMKEYPSKFGFSVSHTTRAPREKEIDGVHYHFTERSKIEEE 234
Query: 276 ITDGKFIEHGEYKGNLYGTAAESVETIINTGRVCVLSPHWQALKMLRTPRLRPYIVFIKP 335
I++GKF+E GN+YGT+ E+VE++ + G+ C+L Q + +R L +F+ P
Sbjct: 235 ISEGKFLEFAHVHGNVYGTSVEAVESVTDEGKRCILDIDVQGARSVRASSLEAIFIFVCP 294
Query: 336 PSLERMVETRTAANARSTFDKESSRAFTEEEFTDIIRSSNRINFLYGYMFDEEVVNEDLA 395
PS E + E R A T ++ R D S +FD +VN+DL
Sbjct: 295 PSFEEL-EKRLRARGTETEEQIQKRLRNARAELDQSNSPG--------LFDHLLVNDDLE 345
Query: 396 SAVSQLLK 403
+ L K
Sbjct: 346 ACYENLKK 353
>03_02_0825 +
11565701-11565862,11565963-11566154,11567674-11567718,
11568224-11568535,11569036-11569092
Length = 255
Score = 41.5 bits (93), Expect = 0.001
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 218 IVLIGAPGVGRNELRRRLVATDPEKYITPIPYTSRPIKSSEQNGKDYVFVTREKMEQDIT 277
+V+ G GVG++ + +RL + E + TSR + E +GKDY FVT+E+ I
Sbjct: 39 LVISGPSGVGKDAVIQRL-QEEREGMHFVVTATSRAKRPGEVDGKDYYFVTKEEFLTMIE 97
Query: 278 DGKFIE----HGEYKG 289
+ +E +GEYKG
Sbjct: 98 RKELLEYALVYGEYKG 113
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 37.9 bits (84), Expect = 0.015
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 1 MHGGAADRSGLIHAGDEVIEVNGISVENKTPADVLSILQNSEGTITFKLVPSFGKGGTRE 60
+ GG ADR+GL H GDE++E++G SV L+ GT T K+ G R
Sbjct: 222 IEGGPADRAGL-HGGDELVEIDGKSVSGLDGEAAAQRLRGRVGT-TVKVKVLDGTENERN 279
Query: 61 SKVR 64
++R
Sbjct: 280 GRIR 283
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 35.9 bits (79), Expect = 0.061
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 GAADRSGLIHAGDEVIEVNGISVENKTPADVLSILQNSEGT-ITFKL 49
G A +G + GDE++ VNGI V K+ DV S+LQ + T +T K+
Sbjct: 197 GPAHSAG-VRQGDELLSVNGIDVMGKSAFDVSSMLQGPKDTFVTIKV 242
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 29.5 bits (63), Expect = 5.3
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 303 INTGRVCV-LSPHWQALKMLRTPRLRPYIVFIKPPSLERMVETRTAANARSTFDKESSRA 361
+NT V LS +A + R RLRP ++ +PP +V+ + D+ES++
Sbjct: 965 LNTSCCLVTLSRGGRASNLSRGRRLRPVLLLDEPPPPGNLVQGGAGPPLQIPVDRESTKH 1024
Query: 362 FTEEEFTDIIRS 373
T + T I RS
Sbjct: 1025 RTHGDDTAIRRS 1036
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 28.7 bits (61), Expect = 9.2
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 3 GGAADRSGLIHAGDEVIEVNGISVENKTPA----DVLSILQNSEGTITFKLVPSFGK 55
G AAD++G GD+V+ + + E PA + ++ G + K+ FGK
Sbjct: 117 GAAADQTGKFEVGDKVLATSAVFGEEIWPAAGYGQTMYCIRQRVGPLYMKMEKRFGK 173
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,614,596
Number of Sequences: 37544
Number of extensions: 531170
Number of successful extensions: 1162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 6
length of query: 421
length of database: 14,793,348
effective HSP length: 84
effective length of query: 337
effective length of database: 11,639,652
effective search space: 3922562724
effective search space used: 3922562724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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