Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000710-TA|BGIBMGA000710-PA|IPR000535|Major sperm
protein, IPR008962|PapD-like
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    73   3e-14
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     70   3e-13
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    30   0.36 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   3.4  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   3.4  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   4.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   7.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   7.8  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 5   NPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK--HKFMVQ 62
           NP  + V+FK+KTTAPK YCVRPNSG + P S   + +  Q +  +P  + K   KF++Q
Sbjct: 27  NPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQ 86

Query: 63  SVIAPEGKT----NIDQVWKEISPE--QLMDYKLKCVFETPRGTNLNDSGDNAAQNDVT 115
           S+   +  T    N  + W E+  +   + D K++CV+ T +      S D   +N  T
Sbjct: 87  SMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPP---QSADKQVENTST 142


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 1   MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK--HK 58
           + L N     + FK+KTTAPK+YCVRPN G +  NS   + +  QP+  +P    K   K
Sbjct: 23  LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDK 82

Query: 59  FMVQSV-IAPEGK-TNIDQVWKEISPEQLMDYKLKCVF-ETPRGTN 101
           F+VQS  + PE +  +I  +W ++S   + + K++CV+ E P   N
Sbjct: 83  FLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVYSEGPSTAN 128


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 152 SINLKTTNTKSENVESDLQKATLEVIHLREEESKL 186
           +I+ + +   +E  E+D  + TLE++H +E E KL
Sbjct: 104 NISFEKSKRDNEGTENDANQYTLELLHAKESELKL 138


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 45  QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISP 82
           Q +Y + +EN +  FM+ +++      +ID +W  +SP
Sbjct: 305 QYMYKEDDENLESYFMMVALLIKYNFISIDNIWAHLSP 342


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 47  VYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPE-QLMDY 88
           V+   NE    +  +  +   EG TN+++VW +I+ + Q  D+
Sbjct: 83  VFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDF 125


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 54   NHKHKFM-VQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGT 100
            NH   F  V+  I P G TN+D +W+     +L+D  L  +F T   T
Sbjct: 1160 NHPFIFEDVERAIDPSG-TNVDLLWRAAGKFELLDRILPKLFLTGHKT 1206


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 49  LDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFET 96
           LDP  + K  F   + +  + +T  D V+K++ P  L+ + L+C +E+
Sbjct: 281 LDPETDSKFSFF--NGLGADNQTFYD-VYKKLVPIDLVSFGLQCTYES 325


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 49  LDPNENHKHKFMVQSVIAPEGKTNIDQV 76
           L  N+NH  +  V +V+  +G TN+D +
Sbjct: 168 LSQNKNHFAQLAVDAVLRLKGSTNLDNI 195


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 152 SINLKTTNTKSENVESDLQKATLEVIHLRE 181
           SIN K T    EN  S L K +L++ HL +
Sbjct: 110 SINTKPTFVLLENKVSGLTKISLKITHLAQ 139


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 136 LIQHEDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHE 189
           ++Q +++N  DD+       K    + ++  S ++K+  E+  L+E +S   HE
Sbjct: 182 MLQLQNENFKDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKESDSFKDHE 235


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,181
Number of Sequences: 5004
Number of extensions: 41047
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 10
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)