Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000710-TA|BGIBMGA000710-PA|IPR000535|Major sperm
protein, IPR008962|PapD-like
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)                       65   4e-11
SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)          63   2e-10
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   2.7  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   6.3  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   8.3  

>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
          Length = 395

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/53 (52%), Positives = 35/53 (66%)

Query: 45  QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETP 97
           QP   DP E  KHKFMVQ++ AP+  T+ + +W+E     LMD KLKCVFE P
Sbjct: 134 QPFEYDPKEKAKHKFMVQTMFAPDNITDQENLWREADANTLMDSKLKCVFELP 186


>SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)
          Length = 305

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 1  MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIA 41
          +RL NP+   V FK+KTTAPK+YCVRPNSG++ PN   E+A
Sbjct: 30 LRLANPSEKRVCFKVKTTAPKRYCVRPNSGIVEPNGAVEVA 70


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 31/46 (67%)

Query: 1   MRLTNPTNDTVLFKIKTTAPKKYCVRPNSGVLAPNSKQEIAITPQP 46
           + L N ++  V +K+KTT+P+ Y VRP+SGV+   S  E+++  QP
Sbjct: 312 LTLKNTSSTQVAYKVKTTSPESYRVRPSSGVINQGSSAEVSVYLQP 357


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 140  EDKNKDDDHPVASINLKTTNTKSENVESDLQK--ATLEVIHLREEESKLR 187
            E+ NK   H  AS+ ++ T  +++NV  + Q+     E  HLR++ S +R
Sbjct: 2604 ENDNKSCQHEKASLAVEITKLRNQNVRFEKQREDCEREKEHLRQQVSLMR 2653


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)

Query: 163 ENVESDLQKATLEVIHLREEESKLRHE 189
           E+ ESD+++  +E+IHLR++  +L  +
Sbjct: 861 EDKESDIEEQVMELIHLRDQIDELNRQ 887


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 151 ASINLKTTNTKSENVESDLQKATLEVIHLREEESKLRHE 189
           A   +++   + +N+ES L  A  ++ ++RE+E KL  E
Sbjct: 557 AEAKIRSLQEECKNLESQLNMANTDLKNIREKEFKLNSE 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,001
Number of Sequences: 59808
Number of extensions: 304020
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 16,821,457
effective HSP length: 80
effective length of query: 168
effective length of database: 12,036,817
effective search space: 2022185256
effective search space used: 2022185256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)