GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000710-TA|BGIBMGA000710-PA|IPR000535|Major sperm
protein, IPR008962|PapD-like
         (248 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    27   0.51 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.4  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 140 EDKNKDDDHPVASINLKTTNTKSENVESDLQKATLEVIHLREEESK 185
           E+  +D+D  +A+  L T++  +   + D Q   LEVI L++++SK
Sbjct: 497 EEDEEDEDDELAAGPLGTSDVVTVE-DGDGQYVVLEVIQLQDKDSK 541


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 83   EQLMDYKLKCVFETPRGTNLNDSGDNAAQNDVTKK 117
            E LM+Y + C   T +   L D+ D  A + + +K
Sbjct: 1387 EPLMNYVISCWVRTSKALKLGDTVDIVAVDVLVEK 1421


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 146 DDHPVASINLKTTNTKSENVESDLQKATLEV 176
           D H V S+N +      EN E+   + +LEV
Sbjct: 793 DQHEVDSLNDEIRRLNQENKEAFTSRMSLEV 823


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,230
Number of Sequences: 2123
Number of extensions: 8528
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 516,269
effective HSP length: 62
effective length of query: 186
effective length of database: 384,643
effective search space: 71543598
effective search space used: 71543598
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)