Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    51   3e-07
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.002
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   5.9  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    27   5.9  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    27   7.7  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 59/319 (18%), Positives = 138/319 (43%), Gaps = 30/319 (9%)

Query: 21  ELCYAEALLLQAAMTIMEGEDLTGLIKGTIKVKSCYNTYKECSKILEKKQW--DTDESK- 77
           +LC ++  L+Q+A+  +  + +   +K   +++  + ++ +  + +   Q   +T E K 
Sbjct: 122 QLCLSDIYLMQSALGFVS-DSIVDSMKAAYRIRKTFLSFSKMMEHVRDVQHKKETGEIKS 180

Query: 78  ---------RHFQSGVRLGMATFNVMXXXXXXXXXXXXEFVGFSGNKALGLSELQAASRS 128
                       +SGV  G      +                F G +   L  L  AS+ 
Sbjct: 181 LSPNATFIDEFIESGVITGYGVLTFLVSMFPPSLSRILSLFSFHGVRKESLELLWRASKY 240

Query: 129 PGMRSVLCDLTLLGYHLVICHF--VGASG---DLKVCEEILEKILKIYPESVWFLVFKGR 183
           P ++  +  L L  ++ +I     +  S    +L+ C + ++ I K Y +   + V + +
Sbjct: 241 PNIQGAIALLCLYAFNAMIQSLGSIPPSNYDQELEHCLQAVKDIRKRYSKGALWAVMEAK 300

Query: 184 LEFLRGLFEPAISTYNCALNSQHNFKQFRHLCFWEIMWVNSLKMEWREAAQYATKLMDES 243
           + FL G  + A+     +++S  + +Q   +  ++   +     ++++AA    +L D +
Sbjct: 301 IYFLTGESQMALEMEELSIDS--SMEQIIAMKGFDTAMLYVGMRKFKQAADAIIELEDLN 358

Query: 244 SWSRTIYSYTKAAMLLQLGSDMT----PNEKHQCN-----ELLRNC-SFYKQRIAGKSLP 293
           SWS   Y Y     LLQ G ++       E+ + +     E L+N  +  +++   ++LP
Sbjct: 359 SWSHAFYRYFAGCCLLQHGKEILGSGGSEEEAKASIDHGIEYLKNAPTLVQKKKKRRTLP 418

Query: 294 MEKFMIKRAARYYTQGGRL 312
           +E ++I++  ++  +  +L
Sbjct: 419 VEAYLIRKVQKWEDRAEKL 437


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 62/283 (21%), Positives = 105/283 (37%), Gaps = 27/283 (9%)

Query: 72  DTDESKRHFQSGVRLGMATFNVMXXXXXXXXXXXXEFVGFSGNK--ALGLSELQAASRSP 129
           D D +  + Q+G  L    F ++               G+ G++  AL    + A  R  
Sbjct: 160 DVDLANEYVQTGTLLCTGLFTLLISLLPPKMITILNVFGYKGDRDWALQCMWMPALQRPT 219

Query: 130 GMRSVLCDLTLLGYH---LVICHFVGASGDL------KVCEEILEKILKIYPES-VWFLV 179
              + +    L+ Y+   + +C     + +       K C EILEK+ K +P+  +W L 
Sbjct: 220 SFFAAVAFAALIQYYSGAVQLCSIYKKTPEEPDGWPDKRCFEILEKVEKAHPDGPMWPLH 279

Query: 180 FKGRLEFLRGLFEPAISTYNCALNSQHNFKQFRHLCFWEIMWVNSLKMEWREAAQYATKL 239
               L  ++   E  +             KQ   L  +E     +    + + A    KL
Sbjct: 280 RAKLLSMVKKQDEAIVVLEELMAKPPPRLKQLEVLIVFEHALDCAFSHRYVDGANSFLKL 339

Query: 240 MDESSWSRTIYSYTKAAMLLQ-LGSDMTPNEKHQCNELLRNCSFYKQRIAGKSLPMEKF- 297
              +  S  +YSY  AA  LQ +  +       + ++LL         +A K+ P++   
Sbjct: 340 SSLNDSSTALYSYFAAACFLQDVHVNANVEALEKASKLLEP---LHDLVANKTAPLDVHI 396

Query: 298 ------MIKRAARYYTQGGRL----VLPAIELLCLWNMFGILT 330
                 +IKR A    QGG        P  EL+ +WN F  +T
Sbjct: 397 RRKVGKLIKRRASAGNQGGLAEYVGFSPLYELVYVWNGFRRMT 439


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 153  ASGDLKVCEEILEKILKIYPESVWFLVFKGR 183
            + GD K    +L+KI K YP++++F +   R
Sbjct: 3075 SKGDTKCAPVVLKKIAKSYPQALFFTLRTAR 3105


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 297 FMIKRAARYYTQGGRLVLPAIELLCLWNM---FGILTYNSRGAQYVLKVIEVTRERVEDH 353
           F ++ + + Y    R  L +  LL L +    F +     +G Q VL V++   +RVE  
Sbjct: 109 FHLQSSDKKYADSDRPKLSSSSLLSLPDQKIPFPVDYSTVQGKQVVLTVLDCVSQRVEFA 168

Query: 354 RFDWMGIYIADNRALLRYMHGCCLAAMGLPRLALNSF 390
           R D++ ++    RAL         A+  +  +A ++F
Sbjct: 169 RLDYIKVW----RALAPIYRNLAYASNTIDPIAFSAF 201


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 153 ASGDLKVCEEILEKILKIYPESVWFLVFKGRLEFLRGLFEP-AISTYNCAL 202
           +S +++ C+E +E+ L  YP+S + + F G  +  + L  P +I   N AL
Sbjct: 11  SSSEIEKCDEDVEEELYSYPDSDFLVTFNGEDDPEKPLNWPVSIKLLNTAL 61


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 341 KVIEVTRERVE-DHRFDWMGIYIADNRALLRYMHGCCLAAMGLPRLAL 387
           K++E+  ++V  +  FDW G+  A       Y+   C +A+ +PR  L
Sbjct: 265 KILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRREL 312


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,839
Number of Sequences: 5004
Number of extensions: 76235
Number of successful extensions: 261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 8
length of query: 487
length of database: 2,362,478
effective HSP length: 76
effective length of query: 411
effective length of database: 1,982,174
effective search space: 814673514
effective search space used: 814673514
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)