Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)                 77   2e-14
SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   3e-07
SB_10719| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.90 
SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  

>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
          Length = 383

 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 318 ELLCLWNMFGILTYNSRGAQYVLKVIEVTRERVEDHRFDWMGIYIADNRALLRYMHGCCL 377
           EL+ +WN F +L       + +LK+++ + E ++        +Y AD+  L + + G C 
Sbjct: 171 ELIHMWNGFRLLRRRPDLVKPLLKLVQSSLESLDPSH----ELY-ADDWCLGKILEGMCY 225

Query: 378 AAMGLPRLALNSFDAVFQLKSEIKEDTFLFPYTVVEVAMCHYQLGDKDKAVQLLNEARRK 437
              G P+ AL S  A      +I  D  L  Y   EV   +  L + D A + LN+AR+ 
Sbjct: 226 QHTGKPQWALESLLAAVSRSKDIVLDNHLGAYACAEVGFLYMDLKNYDLAKKYLNKARKD 285

Query: 438 YSGYSLESRLHFRIHSKMDLVK 459
           Y GY +E+RLHFRIH+ ++++K
Sbjct: 286 YQGYLMENRLHFRIHAGIEVLK 307



 Score = 49.6 bits (113), Expect = 6e-06
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 118 GLSELQAASRSPGMRSVLCDLTLLGYHLVICHFVG----------ASGDLKVCEEILEKI 167
           GL  L    R+  +RS +C + LL YH VI +++             GD+   EEI+E  
Sbjct: 24  GLEHLDKGCRADSLRSPMCAMILLAYHCVITYYLELYIPISRTGIGDGDVDYAEEIIEPF 83

Query: 168 LKIYPESVWFLVFKGRLEFLRGLFEPAISTY 198
           ++ +P+   FL + GR++ ++G  +     Y
Sbjct: 84  MRTFPKGAIFLYYAGRIKQVQGKLDETSYMY 114


>SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 29/79 (36%), Positives = 42/79 (53%)

Query: 73  TDESKRHFQSGVRLGMATFNVMXXXXXXXXXXXXEFVGFSGNKALGLSELQAASRSPGMR 132
           T E+  H Q+ V  G   F++             + +GFSGN+ +GL  LQ AS+S  M+
Sbjct: 152 TAEALCHLQAAVSCGYGLFHLAISLVPPKLLKFCQLLGFSGNRDVGLQALQIASQSEDMK 211

Query: 133 SVLCDLTLLGYHLVICHFV 151
           + +  LTLL YH VI  F+
Sbjct: 212 APVARLTLLWYHAVIRPFI 230



 Score = 41.1 bits (92), Expect = 0.002
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)

Query: 286 RIAGKSLPMEKFMIKRAARYYT---QGGRLVLPAIELLCLWNMFGILTYNSRGAQYVLKV 342
           ++  K  P+E+F+ ++AA Y          +L A+ELL +W  F    Y    +Q VL  
Sbjct: 260 KLVKKKTPLEEFLCRKAALYKKTPPSEDDCLLLALELLYVWRAF----YTC--SQPVL-- 311

Query: 343 IEVTRERVEDHRFDWMGIYIADNRALLRYMHGCCLAAMGLPRLALNSFDAVFQLKSEIKE 402
                + ++D R       +   R+L++   G     +    LA+  F            
Sbjct: 312 ----HKMLQDLRNSKPSPQLIPLRSLIQ---GSVHQILRNDELAVQCFTDALVKSGRSPP 364

Query: 403 DTFLFPYTVVEVAMCHYQLG-DKDKAVQLLNEARRKYSGYSLESRLHFRIHSKM 455
           D  + P+   E+ + + Q     +K  +LL   + ++SGY  E+RL FR+H+ +
Sbjct: 365 DPHVPPFATYELGVLYAQKERTAEKGEELLKRVKDQFSGYDFENRLGFRVHAAL 418


>SB_10719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 32.3 bits (70), Expect = 0.90
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 239 LMDESSWSRTIYSYTKAAMLLQLGSDMTPNEKHQCNELLRNCSFYKQRIAGKSLPMEKFM 298
           L ++S WS+  Y+Y     +  LGS  T   + Q   +         ++  K  P+E+F+
Sbjct: 2   LKEDSKWSQGYYAYLCGVTIGLLGS--TTEAQTQFKSI--------SKLVKKKTPLEEFL 51

Query: 299 IKRAARYY---TQGGRLVLPAIELLCLWNMF 326
            ++AA Y          +L A+ELL +W  F
Sbjct: 52  CRKAALYKKTPPSEDDCLLLALELLYVWRAF 82


>SB_19665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 110 GFSGNKALGLSELQAASRSPGMRSVLCDLTLLGYHLVICHFVGASGDLKVCEEILE 165
           GF G K   + E   +  SP  ++  C+ T +G +   C   G +GD K C +I E
Sbjct: 154 GFEGEKCSDIDECAVSGDSPCDKNAECNNT-VGSYTCTCK-PGYTGDRKTCNDIDE 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,852
Number of Sequences: 59808
Number of extensions: 523515
Number of successful extensions: 1512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 6
length of query: 487
length of database: 16,821,457
effective HSP length: 85
effective length of query: 402
effective length of database: 11,737,777
effective search space: 4718586354
effective search space used: 4718586354
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)