Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 32 1.2
01_01_1218 + 9846644-9847837 31 1.6
04_04_0682 - 27229936-27231087,27231954-27232337 31 2.7
02_04_0405 + 22637025-22637130,22637246-22637403,22637934-226380... 31 2.7
07_01_1174 + 11097044-11097070,11097950-11098096,11098381-110984... 30 4.8
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284... 29 8.3
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 29 8.3
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 20 AELCYAEALLLQAAMTIMEGEDLTGLIKGTIKVKSCYNTYKECSKILEKKQWDTDES-KR 78
AEL + E +L A I EG +TG G +K+ E +IL+ ++ D ES K
Sbjct: 1097 AELLFTE--VLNALHQISEGRPITGSFDGNMKILELRRNIMELEEILQIEKADFTESLKN 1154
Query: 79 HFQSGVRLGMATFNVM 94
+R G +++
Sbjct: 1155 LLNKEIRKGKPFIDIL 1170
>01_01_1218 + 9846644-9847837
Length = 397
Score = 31.5 bits (68), Expect = 1.6
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 265 MTPNEKHQCNEL--LRNCSFYKQRIAGKSLPMEKFMIKRAARYYTQGGRL-VLPAIELLC 321
+T ++ CNE+ L + F K + K +E F +R+ T+G + P++E+L
Sbjct: 248 ITIDDCQDCNEIPHLGDLPFLKYLLIHKMYAVESFG-QRSNPLTTEGKHAPIFPSLEILN 306
Query: 322 LWNMFGILTYN 332
LW M+ + +N
Sbjct: 307 LWEMYSLQFWN 317
>04_04_0682 - 27229936-27231087,27231954-27232337
Length = 511
Score = 30.7 bits (66), Expect = 2.7
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 386 ALNSFDAVFQLKSE-IKEDTFLFPYTV-VEVAMCHYQLGDKDKAVQLLNEARRKYSG 440
A+ DA+ Q+ ++ I+++T + +T +A H +LG+ +KA + L EA ++ +G
Sbjct: 259 AMQDADAMEQVFNQMIRDETVVANWTTYTTLASMHIKLGNSEKAEESLKEAEKRTTG 315
>02_04_0405 +
22637025-22637130,22637246-22637403,22637934-22638099,
22638200-22638517,22638906-22639117
Length = 319
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 374 GCCLAAMGLPRLALNSFDAVFQLKSEIKEDTFLFPYTVVEVAMCHYQLGDKDKAVQLLNE 433
G L +G R A+N + V +L E ED+ +A C+ +LGD ++A +L ++
Sbjct: 250 GASLQRLGKYREAMNCYYKVLELSKETGEDSGC-TEAYGAIADCYTELGDLERAAKLYDK 308
>07_01_1174 +
11097044-11097070,11097950-11098096,11098381-11098424,
11098915-11098952,11099787-11099877,11100873-11100978,
11101062-11101132,11101221-11101290,11101547-11101609,
11101883-11102058,11102104-11102128,11102729-11102800,
11102903-11103004,11103089-11103163,11103749-11103871,
11104320-11104433,11106012-11106053,11106328-11106444,
11106983-11107039,11107424-11107441
Length = 525
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 155 GDLKVCEEILEKILKIYPESVWFLVFKGRLEFLRGLFEPAISTYNCALNSQHN 207
G+ + E LEK++K+ P+ V G ++F ++ + S+Y +L++ N
Sbjct: 296 GEYQKASEFLEKLVKVIPDKVEAYRLLGEVKFELKDYDGSSSSYRKSLSASEN 348
>05_01_0363 -
2846133-2846441,2846820-2846885,2847184-2847276,
2847487-2847600,2847762-2847849,2848116-2848199,
2848312-2848411,2848886-2848949,2849339-2849419,
2849944-2850000,2850188-2850387,2850668-2850971,
2851518-2851707,2851922-2852032,2852111-2852192,
2852443-2853046
Length = 848
Score = 29.1 bits (62), Expect = 8.3
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 227 MEWREAAQYATKLMDESSWSRTIYSYTKAAMLLQLGSDMTPNEKHQCNELLRNCSFYKQR 286
+++ E + + S +Y Y AAMLL + + + + + +QR
Sbjct: 751 IQYPEVTEAGLNFLSMQSEEEGLYEYLNAAMLLVMNDPKPISTSSEWGRGWADPAIRRQR 810
Query: 287 IAGKSLPMEKFMIKRAARYYTQG 309
+AGK + K KR +R ++ G
Sbjct: 811 LAGKKMGRRKG--KRHSRSHSTG 831
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 29.1 bits (62), Expect = 8.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 377 LAAMGLPRLALNSFDAVFQLKSEIKEDTFLFPYTVVEVAMCHYQLGDKDKAVQLL 431
+ G P +NS Q +S++++ +F VV+++ +L D+DKA+ LL
Sbjct: 119 MTTSGFPNSTVNSH---MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILL 170
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,616
Number of Sequences: 37544
Number of extensions: 463059
Number of successful extensions: 1152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 7
length of query: 487
length of database: 14,793,348
effective HSP length: 85
effective length of query: 402
effective length of database: 11,602,108
effective search space: 4664047416
effective search space used: 4664047416
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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