GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
         (487 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical pr...   255   6e-68
U88165-2|AAO12421.1|  597|Caenorhabditis elegans Hypothetical pr...    31   2.4  
U88165-1|AAO12420.1|  656|Caenorhabditis elegans Hypothetical pr...    31   2.4  
AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical ...    30   3.2  
Z81569-1|CAB04601.2|  151|Caenorhabditis elegans Hypothetical pr...    30   4.2  
Z81467-4|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81467-3|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   5.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   5.6  
Z19157-1|CAA79569.1| 1416|Caenorhabditis elegans Hypothetical pr...    29   7.4  

>U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical
           protein C32D5.6 protein.
          Length = 578

 Score =  255 bits (624), Expect = 6e-68
 Identities = 153/450 (34%), Positives = 234/450 (52%), Gaps = 20/450 (4%)

Query: 14  TDLEAHAELCYAEALLLQAAMTIMEGEDLTGLIKGTIKVKSCYNTYKECSKIL-EKKQWD 72
           TD E HAELCYA++LL++A +T    ++    IKG + +++CY TY+ C K++ E   W 
Sbjct: 131 TDEELHAELCYAQSLLIRAMLTFFHDDNFASFIKGALNIRTCYQTYRYCEKLMNEPSVWV 190

Query: 73  TDESK--RHFQSGVRLGMATFNVMXXXXXXXXXXXXEFVGFSGNKALGLSELQ-AASRSP 129
               K    F+SG R+G+ TF++M            E VGFSG+K  G+ +L   AS + 
Sbjct: 191 GRNKKVQEQFESGTRMGLGTFSLMLSVLPSKVLRLLEVVGFSGDKVAGMRDLHHVASMTG 250

Query: 130 GMRSVLCDLTLLGYHLVICHFVGASG-DLKVCEEILEKILKIYPESVWFLVFKGRLEFLR 188
            + S L  + LL +HL+I   +G    DL+VC+ ++  +  ++P     L  K RL  + 
Sbjct: 251 TLCSPLAKMVLLTWHLIISFVLGTGQPDLEVCKRLMPGLTHLWPRGAIMLFMKARLLLIS 310

Query: 189 GLFEPAISTYNCALNSQHNFKQFRHLCFWEIMWVNSLKMEWREAAQYATKLMDESSWSRT 248
           G  E AI  +N ++ SQ  +KQF H C+WE+++ +  +  W  +A YA  LM ES WSR 
Sbjct: 311 GDIEAAIHYFNMSIESQDVYKQFHHGCYWELLFAHGYQRRWSHSANYARLLMKESKWSRC 370

Query: 249 IYSYTKAAMLLQLGSDMTPNE---KHQCNELLRNCSFYKQRIAGKSLPMEKFMIKRAARY 305
           +Y+Y    + +   +D T  E       N L       + RIAGKS+P+EK+  ++A R+
Sbjct: 371 VYTY---LLCIFFAADETVEEGRRNETINALAGKVDGLRIRIAGKSIPVEKYCGRKAKRF 427

Query: 306 YTQGGRLVLPAIELLCLWNMFGILTYNSRGAQYVLKVIEVTRERVEDHRFDWMGIYIADN 365
            T    L+    E +  WN F I   NS+    +++ I    +RV + +     I   D+
Sbjct: 428 TTTNS-LLFAHYEFIYFWNGFDIFGKNSK----MVRGIVEDMDRVWEMKKSTCDI---DD 479

Query: 366 RALLRYMHGCCLAAMGLPRLALNSFDAVFQLKSEIKEDTFLFPYTVVEVAMCHYQLGDKD 425
             L  ++ G  L  + L   A   F  V + +S IK  T+L P    E+AM         
Sbjct: 480 YCLYYFLKGVALRHLSLHAQAEECFKIVLERESSIKSFTYLPPNATYELAMLRISEQQFM 539

Query: 426 KAVQLLNEARRKYSGYSLESRLHFRIHSKM 455
           +A  LL++A R Y  YSLE++LHFRIHS M
Sbjct: 540 EAQTLLDKA-RAYKSYSLENKLHFRIHSAM 568


>U88165-2|AAO12421.1|  597|Caenorhabditis elegans Hypothetical
           protein F54C1.5b protein.
          Length = 597

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 414 VAMCHYQLGDKDKAVQLLNE 433
           +A+CHY+ GD D A++L++E
Sbjct: 122 IALCHYRRGDYDSALKLISE 141


>U88165-1|AAO12420.1|  656|Caenorhabditis elegans Hypothetical
           protein F54C1.5a protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 414 VAMCHYQLGDKDKAVQLLNE 433
           +A+CHY+ GD D A++L++E
Sbjct: 181 IALCHYRRGDYDSALKLISE 200


>AC024755-5|AAK84601.1|  153|Caenorhabditis elegans Hypothetical
           protein Y34B4A.5 protein.
          Length = 153

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 46  IKGTIKVKSCYNTYKECSKILEKKQWDTDESKRHFQSGVRLGMATFNVMXXXXXXXXXXX 105
           I G  KV   +N Y EC   L   + D      H ++G+RLG A   V+           
Sbjct: 6   ISGLFKVCDAFNKYYEC---LGPARRDCTSISYHVKAGLRLGDAV-QVVSMYKQFGFACG 61

Query: 106 XEFVGFSGN 114
             F GFS N
Sbjct: 62  AGFEGFSNN 70


>Z81569-1|CAB04601.2|  151|Caenorhabditis elegans Hypothetical
           protein K11B4.2 protein.
          Length = 151

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)

Query: 273 CNELLRNCSFYKQRI 287
           C ELLRNC FYKQ++
Sbjct: 95  CIELLRNCMFYKQQL 109


>Z81467-4|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 222 VNSLKMEWREAAQYATKLMDESSWSRTIYS--YTKAAMLLQLGSDMTPNEKHQCNELLRN 279
           + S +++ ++A Q ATKLMD S     +    + K A   Q+G++ T    +  N L+  
Sbjct: 598 LQSKQIDLQQAIQTATKLMDSSDCDEMVLRQVFEKLAS-CQMGNEGTEPNNNILNVLMLA 656

Query: 280 CSFYKQRIAGKSLPMEKFMIKRAARY 305
           C   +      + P +  ++ +A ++
Sbjct: 657 CQVNEDDRLKFTAPQDGILLNKARQF 682


>Z81467-3|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 222 VNSLKMEWREAAQYATKLMDESSWSRTIYS--YTKAAMLLQLGSDMTPNEKHQCNELLRN 279
           + S +++ ++A Q ATKLMD S     +    + K A   Q+G++ T    +  N L+  
Sbjct: 602 LQSKQIDLQQAIQTATKLMDSSDCDEMVLRQVFEKLAS-CQMGNEGTEPNNNILNVLMLA 660

Query: 280 CSFYKQRIAGKSLPMEKFMIKRAARY 305
           C   +      + P +  ++ +A ++
Sbjct: 661 CQVNEDDRLKFTAPQDGILLNKARQF 686


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 122 LQAASRSPGMRSVLCDLTLLGYHLVICHFVGASGDLKVCEEILEKILKIYPESVW 176
           L+ + R+P  R + C   +  Y L+    VG    +++ E + E++  I+  +VW
Sbjct: 340 LRQSDRTPYFRKIACFHEMSYYVLIALFLVGNIFTIEINETVPEELQLIFVHTVW 394


>U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical
           protein C26E6.7a protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 165 EKILKIYPESVWFLVFKGRLEFLRGLFEPAISTYNCALNSQHNFKQFRH 213
           +KILK   E +W L F+   +FL       I  ++C  +     K  R+
Sbjct: 233 KKILKSIQEILWLLHFQKHDDFLESTSRLTIKNFSCHFDEHQRLKLLRN 281


>U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical
           protein C26E6.7b protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 165 EKILKIYPESVWFLVFKGRLEFLRGLFEPAISTYNCALNSQHNFKQFRH 213
           +KILK   E +W L F+   +FL       I  ++C  +     K  R+
Sbjct: 235 KKILKSIQEILWLLHFQKHDDFLESTSRLTIKNFSCHFDEHQRLKLLRN 283


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 222 VNSLKMEWREAAQYATKLMDESSWSRTIYS--YTKAAMLLQLGSDMTPNEKHQCNELLRN 279
           + S +++ ++A Q ATKLMD S     +    + K A   Q+G++ T    +  N L+  
Sbjct: 602 LQSKQIDLQQAIQTATKLMDSSDCDEMVLRQVFEKLAS-CQMGNEGTEPNNNILNVLMLA 660

Query: 280 CSFYKQRIAGKSLPMEKFMIKRAARY 305
           C   +      + P +  ++ +A ++
Sbjct: 661 CQVNEDDRLKFTAPQDGILLNKARQF 686


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 222 VNSLKMEWREAAQYATKLMDESSWSRTIYS--YTKAAMLLQLGSDMTPNEKHQCNELLRN 279
           + S +++ ++A Q ATKLMD S     +    + K A   Q+G++ T    +  N L+  
Sbjct: 598 LQSKQIDLQQAIQTATKLMDSSDCDEMVLRQVFEKLAS-CQMGNEGTEPNNNILNVLMLA 656

Query: 280 CSFYKQRIAGKSLPMEKFMIKRAARY 305
           C   +      + P +  ++ +A ++
Sbjct: 657 CQVNEDDRLKFTAPQDGILLNKARQF 682


>Z19157-1|CAA79569.1| 1416|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1416

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 19   HAELCYAEALLLQAAMTIMEGEDLTGLIKGTIKVKSCY-NTYKECSKILEKK 69
            H  LC+ +A L +A +T+ + ++ +G I+G+ + K  +     +C   +EKK
Sbjct: 1135 HNGLCHNKAKLGEACLTVRQCQENSGCIEGSCECKKGFIEKAGKCMTPVEKK 1186


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,618,594
Number of Sequences: 27539
Number of extensions: 410791
Number of successful extensions: 1209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 13
length of query: 487
length of database: 12,573,161
effective HSP length: 84
effective length of query: 403
effective length of database: 10,259,885
effective search space: 4134733655
effective search space used: 4134733655
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)