GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
         (487 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   5.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 268 NEKHQCNELLRNCSFYKQRIAGKSLPME-KFMI 299
           +EK   NELL + +  ++ +A +S P+E KF I
Sbjct: 54  HEKRLLNELLSSYNTLERPVANESEPLEVKFGI 86


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 268 NEKHQCNELLRNCSFYKQRIAGKSLPME-KFMI 299
           +EK   NELL + +  ++ +A +S P+E KF I
Sbjct: 54  HEKRLLNELLSSYNTLERPVANESEPLEVKFGI 86


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 347 RERVEDHRFDWMGIYIADNRALL 369
           ++R E   FDW  + +  +RALL
Sbjct: 411 QDRRERMEFDWKQVALVSDRALL 433


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,381
Number of Sequences: 429
Number of extensions: 4683
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 487
length of database: 140,377
effective HSP length: 60
effective length of query: 427
effective length of database: 114,637
effective search space: 48949999
effective search space used: 48949999
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)