Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000708-TA|BGIBMGA000708-PA|undefined
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16470.1 68417.m02494 pentatricopeptide (PPR) repeat-containi... 31 2.3
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote... 30 4.0
At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /... 30 4.0
At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /... 30 4.0
At3g45440.1 68416.m04905 lectin protein kinase family protein co... 29 5.2
At5g04530.1 68418.m00453 beta-ketoacyl-CoA synthase family prote... 29 6.9
At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /... 29 6.9
At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing ... 29 9.2
>At4g16470.1 68417.m02494 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 459
Score = 30.7 bits (66), Expect = 2.3
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 276 LLRNCSFYKQRIAGKSLPMEKFMIKRAARYYTQGGRLVLPAIELLCLWNMFGILTYNSRG 335
LL+ C K+ GK + + F++ A Y + L+L A+ L WN I Y +G
Sbjct: 88 LLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSDLIPWNAM-ISGYVQKG 146
Query: 336 AQY--VLKVIEVTRERVEDHRFDWMGIYIADNRALLRYMHG 374
+ + ++ + R+ ++ + ++ A + AL R HG
Sbjct: 147 LEQEGLFIYYDMRQNRIVPDQYTFASVFRACS-ALDRLEHG 186
>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
kinase, putative and genscan+
Length = 668
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 352 DHRFDWMGIYIADNRALLRYMHGCCLAAMGLPRLA-LNSFDAVFQLKSEIKED 403
DH W G+ DN+ + + GC L P L+ L+ ++ K+++ D
Sbjct: 61 DHFCSWFGVTCVDNKVQMLNLSGCSLGGTLAPELSQLSELRSLILSKNKLSGD 113
>At3g15350.2 68416.m01938 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 231 EAAQYATKLMDESSWSRT--IYSYTKAAMLLQLGSDMTPNEKHQCNELLR 278
E + A+++ ++ +S+T +Y TKA ++ G M N H C LL+
Sbjct: 121 ERLELASRINNDPMYSKTGNVYMITKANLVTYKGPTMVANTLHACAVLLK 170
>At3g15350.1 68416.m01937 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 424
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 231 EAAQYATKLMDESSWSRT--IYSYTKAAMLLQLGSDMTPNEKHQCNELLR 278
E + A+++ ++ +S+T +Y TKA ++ G M N H C LL+
Sbjct: 121 ERLELASRINNDPMYSKTGNVYMITKANLVTYKGPTMVANTLHACAVLLK 170
>At3g45440.1 68416.m04905 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and PS00108: Serine/Threonine protein
kinases active-site signature, PROSITE:PS00108
Length = 669
Score = 29.5 bits (63), Expect = 5.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 315 PAIELLCLWNMFGILTYNSRGAQYVL---KVIEVTRERVED---HRFDWMGIYIADN 365
P++ L+ L + I+ + + GA YV K E+ E ++ HRF + +YIA N
Sbjct: 284 PSVVLIVLLILLAIIVFLALGAAYVYRRRKYAEIREEWEKEYGPHRFSYKDLYIATN 340
>At5g04530.1 68418.m00453 beta-ketoacyl-CoA synthase family
protein KCS1 fatty acid elongase 3-ketoacyl-CoA
synthase 1, Arabidopsis thaliana, EMBL:AF053345
Length = 464
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 53 KSCYNTYKECSKILEKKQWDTDESKRHFQSGVRLGMATFNVM 94
++CY + EC K +E+++ DT+ + Q LG+ + +
Sbjct: 31 RNCYMLHYECYKGMEERKLDTETCAKVVQRNKNLGLEEYRFL 72
>At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 406
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 231 EAAQYATKLMDESSWSRT--IYSYTKAAMLLQLGSDMTPNEKHQCNELLR 278
E ++ A+++ ++ +S+ +Y TKA ++ G M N H C LL+
Sbjct: 104 ERSELASRISNDPMYSKAGNVYMITKANLVTYTGPTMVANTLHACAILLK 153
>At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing
protein similar to DNA-binding protein DAG1/BBFa
GI:4581965 [Arabidopsis thaliana]
Length = 294
Score = 28.7 bits (61), Expect = 9.2
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 237 TKLMDESSWSRTIYSYTKAAMLLQLGSDMTPNEKHQCNELLRNCSFYKQRIAGKSLPMEK 296
T MD ++ + I K M P +CN +Y SL +
Sbjct: 37 TTTMDSTTATTMIMDDEKKLMTTMSTRPQEPRNCPRCNSSNTKFCYYNNY----SLAQPR 92
Query: 297 FMIKRAARYYTQGGRL 312
++ K RY+T+GG L
Sbjct: 93 YLCKSCRRYWTEGGSL 108
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,182,294
Number of Sequences: 28952
Number of extensions: 393829
Number of successful extensions: 1215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 9
length of query: 487
length of database: 12,070,560
effective HSP length: 84
effective length of query: 403
effective length of database: 9,638,592
effective search space: 3884352576
effective search space used: 3884352576
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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