Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.1  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             27   3.3  
SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)                   26   5.8  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  
SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)                  25   7.7  
SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)                   25   7.7  

>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 32 PYEELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMVHVTPWSRAP 89
          P  EL   ++M  S   C+     + +A L +L    + +G  D    + +  W R P
Sbjct: 21 PRSELPRDKNMAASTVRCIHSNFFQSVATLAELAHREYQSGNYDRAEQICMQLWRREP 78


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 18  LEGVGRSNDMKCMMPYEELVNVRDMLKSV 46
           LEG+G   D KC MP  E+    D+  S+
Sbjct: 179 LEGIGEEGDNKCAMPDAEVSTEWDLRISI 207


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 41  DMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMVHVTPWSRAPIFFTRYFYLT 99
           D+  ++  C+   +AR++   T+   + F+ G       +H TPW     +   Y+YL+
Sbjct: 326 DLAYALKFCLQ--IARLLT--TESGLSAFVGGGGGGCVHIHCTPWYGPAFYGLSYYYLS 380


>SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)
          Length = 489

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 54  LARIIAALTDLHFTTFLAGANDLLGMVHVTPW 85
           +  +I+ LT+LHF +   G  +++G  H   W
Sbjct: 137 IQHLISRLTELHFNSGRYGWTNMIGAHHRLAW 168


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 2    EQKATKTDFLLQIPLILEGVGR 23
            E  A KT  LLQIP+  E VGR
Sbjct: 1358 ESSAKKTSNLLQIPVQSEPVGR 1379


>SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)
          Length = 700

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 36  LVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMVHVTPW 85
           ++ +RD++ S+S  +SG    I+  +  LH    L   + L   V   PW
Sbjct: 528 VIVLRDIVSSISYKLSGRTLGILGPVNTLHLALLLYIISFLSYAVMENPW 577


>SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)
          Length = 791

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 65  HFTTFLAGANDLLGMVHVTPWSRAP 89
           H T F+  +N++LG  H+T ++ AP
Sbjct: 241 HITAFIRASNEVLG--HITTFTLAP 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,629
Number of Sequences: 59808
Number of extensions: 91649
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)