GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    30   0.057
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   0.40 
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   0.93 
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    24   4.9  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    23   6.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    23   8.6  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.057
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 44  KSVSNCVSGGLARIIAALTDLHFTTFLAGANDL 76
           K VSN V   L  II  LT+ +  +FLAGA DL
Sbjct: 403 KIVSNNVESVLVEIIPRLTEKYKVSFLAGALDL 435


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 30  MMPYEELVNVRDMLKSVSNCVSGGLARIIAALTDLHF 66
           + P E  +N+    K V NC S  L  ++A  TD  F
Sbjct: 924 LSPVESKINLMVAPKRVLNCASDSLRALLAGKTDKSF 960


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 0.93
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 10  FLLQIPLILEGVGRSNDMKCMMPYEE--LVNVRDMLKSVSNC 49
           F+  IPL   GV     +  M PY E  L  +R +  + +NC
Sbjct: 184 FITNIPLCASGVFTGTFVVSMRPYPEKDLERIRKITSAYTNC 225


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 41  DMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMVHVTP 84
           +MLK  S  +  GL + +A LTD  F+    G++  L + HV P
Sbjct: 485 EMLKPSSAIMGAGLGKDVALLTDGRFS---GGSHGFL-IGHVDP 524


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 20  GVGRSNDMKCMMP-YEELVNVRDMLKSVSN 48
           G+G  +DM+C+ P YE +      +K  +N
Sbjct: 351 GIGSEHDMQCLPPSYETMGPCEKEMKEETN 380


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 63  DLHFTTFLAGANDLLGMVHVTPWSRA 88
           +L   +FLA  ND    V+ +PW R+
Sbjct: 79  NLKLPSFLAPPNDKDSPVNQSPWKRS 104


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,337
Number of Sequences: 5004
Number of extensions: 13809
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)