GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0215 - 19117335-19117390,19118051-19118426,19118861-191189...    27   1.8  
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    27   2.4  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    26   4.3  
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    25   7.5  
02_01_0120 + 884467-887649                                             25   9.9  

>05_04_0215 -
           19117335-19117390,19118051-19118426,19118861-19118919,
           19120455-19120712,19120853-19121059,19121201-19121351
          Length = 368

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 14  IPLILEGVGRSNDMKCMMPYEELVNVRDM-LKSVSNCVSGGL 54
           IPL L+ +G  N+   ++P+  +  VR   ++   N V GGL
Sbjct: 252 IPLALQAIGTGNNQHLIVPFNRITFVRPRGVEIGQNGVVGGL 293


>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 26  DMKCMMPYEELVNVRDMLKSVSNCVSGGLARIIAA 60
           ++KC   YE L++++ + K  +  +SG   +I+ A
Sbjct: 471 ELKCFQSYEMLLDIQKLFKGTTGGLSGLSKKILGA 505


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 10  FLLQIPL-ILEGVGRSNDMKCMMPYEELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTT 68
           F   IP+ I++ +   +D++ M+P+ + +  R+ LKS+   V G L  I   +  +   T
Sbjct: 384 FFFMIPIAIVQSMANLDDIERMLPFLKPIIERNSLKSI---VQGFLPGIALKIFLILLPT 440

Query: 69  FLAGANDLLG 78
           FL   + + G
Sbjct: 441 FLVMMSKIEG 450


>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 29  CMMPYEELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFL 70
           CM   EEL+ + D+LK    C  G    I+      H  + L
Sbjct: 342 CMALLEELLPLPDLLKMSVQCPDGNSPEIVKNRVKQHLDSVL 383


>02_01_0120 + 884467-887649
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 53  GLARIIAALTDLHFTTFLAG 72
           GLAR++ A  D H TT L G
Sbjct: 924 GLARLVRAHDDTHVTTDLVG 943


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,858
Number of Sequences: 37544
Number of extensions: 89845
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)