GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    28   1.7  
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    27   3.0  

>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
           protein.
          Length = 2013

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 16  LILEGVGRSNDMKCMMPYEELVNVRDMLKSVSNCVSGGLARIIAALTD 63
           LI +   + N  +C     E+V+VRD L+SV +  +   + II   TD
Sbjct: 685 LIADLESKKNSCECDQLRLEIVSVRDKLESVESAFNLASSEIIQKATD 732


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
           kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 16  LILEGVGRSNDMKCMMPYEELVNVRDMLKSVSNCVSGGLARIIAALTD 63
           LI +   + N  +C     E+V+VRD L+SV +  +   + II   TD
Sbjct: 685 LIADLESKKNSCECDQLRLEIVSVRDKLESVESAFNLASSGIIQKATD 732


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,327,143
Number of Sequences: 52641
Number of extensions: 143338
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 24,830,863
effective HSP length: 73
effective length of query: 26
effective length of database: 20,988,070
effective search space: 545689820
effective search space used: 545689820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)