GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-8|AAG24010.1|  189|Caenorhabditis elegans Hypothetical ...    26   3.9  
U41263-3|AAC24425.1|  361|Caenorhabditis elegans Hypothetical pr...    25   6.8  

>AF016447-8|AAG24010.1|  189|Caenorhabditis elegans Hypothetical
          protein C54F6.5 protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 23 RSNDMKCMMPYEELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGAN 74
          + ND++C++  E +  V D  K    C SG + +    + D   T    G N
Sbjct: 26 KENDIECVLSCE-VDKVEDWEKCAEGCYSGKMGKFYFIIYDSDRTFVSCGTN 76


>U41263-3|AAC24425.1|  361|Caenorhabditis elegans Hypothetical
           protein T19D12.5 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 14  IPLILEGVGRSNDMKCMMPYEELVNVRDMLKS-----VSNCVSGGLA-RIIAALTDLHFT 67
           +P+I  G G +     ++     +NV D+ KS     +S C  G +  ++IAAL DLH T
Sbjct: 121 VPMIY-GSGHAEKYNFIIMQILSINVGDIKKSSPNKKLSQCSVGRIIHQVIAALQDLHET 179

Query: 68  TFL 70
            ++
Sbjct: 180 GYV 182


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,581
Number of Sequences: 27539
Number of extensions: 71533
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 12,573,161
effective HSP length: 70
effective length of query: 29
effective length of database: 10,645,431
effective search space: 308717499
effective search space used: 308717499
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)