GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000706-TA|BGIBMGA000706-PA|undefined
         (99 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote...    27   1.6  
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr...    26   3.7  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    26   3.7  
At5g01990.1 68418.m00118 auxin efflux carrier family protein con...    26   4.8  
At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    26   4.8  
At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family pr...    26   4.8  

>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           [Pinus sylvestris] gi|12054894|emb|CAC20842; contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 1124

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 24  SNDMKCMMPYE--ELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMV 80
           +N +   +P E  +L N+ +++   +N ++G L R +  L  L  TTF AG ND  G +
Sbjct: 166 NNKLSGPLPEEIGDLYNLEELVAYTNN-LTGPLPRSLGNLNKL--TTFRAGQNDFSGNI 221


>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
           protein contains similarity to helix-loop-helix
           DNA-binding protein
          Length = 294

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 42  MLKSVSNCVSGGLARIIAALTDL 64
           +LK+VS+ + G + +IIAAL DL
Sbjct: 228 LLKTVSHKIPGQVMKIIAALEDL 250


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 18  LEGVGRSNDMKCMMPYEELV--NVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGAND 75
           L    +SN  K   P  +LV   +    +S S  V    AR++  +       F  G  D
Sbjct: 449 LSSKDKSNKTKRPQPLIKLVMRRLESSFRSFSRPVLHAAARVVQEMGKSRAAAFAMGLQD 508

Query: 76  LLGMVHVTPWSRA 88
           +   VHV  +S A
Sbjct: 509 IDESVHVNAFSDA 521


>At5g01990.1 68418.m00118 auxin efflux carrier family protein
          contains auxin efflux carrier domain, Pfam:PF03547
          Length = 431

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 54 LARIIAALTDLHFTTFLAGANDLLGMVHVTPWSRAPIF 91
          +ARI+AAL D       AG   +LG + +     A +F
Sbjct: 2  IARILAALADSMEMPVAAGGGSVLGTIKIAVMPIAKVF 39


>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/51 (37%), Positives = 23/51 (45%)

Query: 35  ELVNVRDMLKSVSNCVSGGLARIIAALTDLHFTTFLAGANDLLGMVHVTPW 85
           EL  V   L  VSN   G L  + +AL  L    F AG  D+LG+     W
Sbjct: 124 ELSAVAIALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSW 174


>At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 Helix-loop-helix
           DNA-binding domain
          Length = 414

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 24  SNDMKCMMPYE-ELVNVRDMLKSVSNCVSGGLARIIAALTDLHFT 67
           + +  C+   E +L+    M+K +S    G L + IAAL DLH +
Sbjct: 309 AENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLS 353


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,735
Number of Sequences: 28952
Number of extensions: 69349
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 12,070,560
effective HSP length: 70
effective length of query: 29
effective length of database: 10,043,920
effective search space: 291273680
effective search space used: 291273680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)