Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000705-TA|BGIBMGA000705-PA|IPR003929|Calcium-activated
BK potassium channel, alpha subunit
         (1061 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   5.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   9.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 274 FTYASFHSHR------KYGVALVGVRPAELPEFYED 303
           +T+  FH+        K  + +VG+RP  LP F ++
Sbjct: 795 YTFEQFHNKELLWTSVKKALMIVGIRPERLPSFDDE 830


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 274 FTYASFHSHR------KYGVALVGVRPAELPEFYED 303
           +T+  FH+        K  + +VG+RP  LP F ++
Sbjct: 833 YTFEQFHNKELLWTSVKKALMIVGIRPERLPSFDDE 868


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 659 MLGTIDWSITELSQSSNMRFMQFRAHDKYALHLSKMEKREKER 701
           +L  +DW +  +  S N+    + A   Y L  ++++K +KE+
Sbjct: 465 LLFAVDWMLDRIRTSINVLGDGYGAGIVYHLSKAELDKMDKEK 507


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 1017 PPEETPRMALEPFQDIAAALPSTSGGSTMPVN 1048
            PP E P + ++P QD A         S  P N
Sbjct: 490  PPREAPLVGVQPHQDSATPADQPLDLSAKPKN 521


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 916 SDIVPLMVYKLEILNHYELASPTII 940
           +D  P++VY+  I  HY +   T +
Sbjct: 236 NDTYPMIVYEFSISRHYGILHATYV 260


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine receptor
            protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 1017 PPEETPRMALEPFQDIAAALPSTS-----GGSTMPVNVTP 1051
            P E +  + L  F D AAA+ STS     GGS+ P   +P
Sbjct: 57   PEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,860
Number of Sequences: 429
Number of extensions: 12578
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 1061
length of database: 140,377
effective HSP length: 65
effective length of query: 996
effective length of database: 112,492
effective search space: 112042032
effective search space used: 112042032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)