GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000705-TA|BGIBMGA000705-PA|IPR003929|Calcium-activated
BK potassium channel, alpha subunit
         (1061 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    33   0.16 
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    29   3.4  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    28   6.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    28   7.9  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 286 GVALVGVRPAE-LPEFYEDTIL--LNPGPR-----HIMKSTDTCYYMSITKEENSAFVVS 337
           G+ LV + P + LPEFY D ++   +  P      H+     +CY+   T  +N   +VS
Sbjct: 99  GIVLVSINPYQNLPEFYNDNLIKHFHKDPEAAKVPHLYSIASSCYHALTTDSKNQTIIVS 158


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 352 TACSFLSNERNPDEGSTSQQKKPDGSSVVQCEVPQVVLEXXXXXXXXXXXXRIKNLKTLS 411
           T  S +SNE +    +  QQ K +     Q     + L              + +L T  
Sbjct: 197 TKKSKISNENDTIFKANFQQNKYESLHAKQISASDLSLHQEFVSASIVQQPELNSLLTSQ 256

Query: 412 CANFNFASSKLADRSTSESRTCLKESPGIESVVDSHLLLPKPETSNFLSPDTLS 465
             N   + S   D S+SES + + +S  + S  DS       +T+   S DT+S
Sbjct: 257 SKNSTPSES---DSSSSESSSSVSDSSDLSSTSDSSSGDESSDTARQSSSDTIS 307


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 101 LSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDTDLIRARMNEAEACFILAAR 153
           + P +LD   + +LQ  I    V  +Q SC++D  ++  R    EA  +LAAR
Sbjct: 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQDIGVMDVRTTACEA--LLAAR 344


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 3   IAVYYLFFTADISSITKSIYTGLSELLARKRSLENMFFEQLAFTWMERQK 52
           +  YYLF   +++   K++   L  L A++ +   +FF +   +  ++QK
Sbjct: 455 VIAYYLFNLFEVAREVKNLLLLLEGLKAQRHNKPKLFFRKFNLSLFDKQK 504


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,713,561
Number of Sequences: 5004
Number of extensions: 198630
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 6
length of query: 1061
length of database: 2,362,478
effective HSP length: 80
effective length of query: 981
effective length of database: 1,962,158
effective search space: 1924876998
effective search space used: 1924876998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)