GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000705-TA|BGIBMGA000705-PA|IPR003929|Calcium-activated
BK potassium channel, alpha subunit
         (1061 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0250 - 26682207-26683811                                         33   1.2  
05_01_0311 + 2452230-2452232,2452401-2452809,2454136-2454263,245...    31   3.7  

>05_06_0250 - 26682207-26683811
          Length = 534

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 165 TILRSWAVKDFAPKVAQYVQIFRPENKLHVKFAEFVVCEDEFKYALLA---NNCTCPGAS 221
           T + +W VKD            RP ++LH+ F    +C D     L +    NCT P   
Sbjct: 181 TAIDAWGVKDLEILAGTPAHQLRPLDRLHI-FPHQGICSDPRSSTLTSLTLANCTIPPLQ 239

Query: 222 TLVTLLLHTSRGQEGQQSPEEWHRLYGKCSGNEIYHI 258
               L +   +       P ++  ++  C+   + H+
Sbjct: 240 GFQALRILVLQHLPSSTRPADYESVFTSCTQLRVLHL 276


>05_01_0311 +
           2452230-2452232,2452401-2452809,2454136-2454263,
           2455287-2455436,2455526-2455681,2455775-2455986,
           2456306-2456407,2456517-2456653,2456769-2457055
          Length = 527

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 2/137 (1%)

Query: 335 VVSDKQAVPNPTIPKDQTACSFLSNE-RNPDEGSTSQQKKPDGSSVVQCEVPQVVLEXXX 393
           V SD +     ++ +D + C    N  ++ D  S    + P G++    +    VL    
Sbjct: 391 VYSDNRPQSTASVTEDLSRCLIRDNNLKSQDSASVGASRIPQGAAARPGKAVGSVLRYGN 450

Query: 394 XXXXXXXXXRIKNLKTLSCANFNFASSKLADRSTSESRTCLKESPGIESVVDSHLLLPKP 453
                      +     + A    +S  L       ++TC  E+  +E +  S    PKP
Sbjct: 451 CSTSAAEQQYEQRRVVRNPAIAPNSSVPLGSSYPRRNQTCKSETGDVERIDSSQTGPPKP 510

Query: 454 ETSNFLSPDTLSHRGGN 470
             +N L P T+  R G+
Sbjct: 511 YVANKL-PATVDGRSGH 526


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,038,099
Number of Sequences: 37544
Number of extensions: 1259164
Number of successful extensions: 2496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 2
length of query: 1061
length of database: 14,793,348
effective HSP length: 90
effective length of query: 971
effective length of database: 11,414,388
effective search space: 11083370748
effective search space used: 11083370748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)