GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000705-TA|BGIBMGA000705-PA|IPR003929|Calcium-activated
BK potassium channel, alpha subunit
         (1061 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50430.1 68416.m05516 expressed protein                             32   2.3  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    31   4.1  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    31   4.1  
At1g65985.1 68414.m07487 expressed protein contains Pfam profile...    31   5.4  
At1g51500.1 68414.m05796 ABC transporter family protein similar ...    30   9.4  

>At3g50430.1 68416.m05516 expressed protein 
          Length = 642

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 7   YLFFTADISSITKSIYTG-LSELLARKRSLENMFFEQLAFTWMERQKLGGSYSSHRAQSE 65
           +LF     + I  S +   L E   RK+ +  MF       W+ERQ  G  +S HR  S+
Sbjct: 396 FLFLRCSFTLIYSSRHNDKLCEFDCRKKGMAEMF------KWIERQIPGNMFSDHRIYSK 449

Query: 66  KHV 68
           K+V
Sbjct: 450 KNV 452


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%)

Query: 632 NPIILLLERRPDVAFLDAISYFPLVYWMLGTIDWSITELSQSSNMRFMQFRAHDKYALHL 691
           NP IL  ++  D    D  S    VY   G +  + ++LS+ + + F   R  + YA+ +
Sbjct: 391 NPEILDADQVDDATLFDRDSSVGCVYGPFGLLALASSDLSEQTAIFFKVIRRGNGYAVVM 450

Query: 692 SKMEKREKER 701
              EKR   R
Sbjct: 451 CSSEKRSSLR 460


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 775 YQKLCSTSCEIPIGIYRTQDTSMADASHHQEELDGGDFPACGRQEA-TSCLGGCYGERTP 833
           Y+ L  +SC IPI  +       A+  H   E+  G F     +         C G    
Sbjct: 327 YESLLPSSCRIPIHTFGFGSDHDAELMHTISEVSSGTFSFIETETVIQDAFAQCIGGLLS 386

Query: 834 VYSTSLADEARDNHIQQIERAEI-ANLVRSRM-ESLNLTGVDYDDV-SEKRNSLSYVIIN 890
           V       E    H Q ++ + I A   RSR+        +D  D+ +E+      ++  
Sbjct: 387 VVILEQVVEIECIHEQGLKISSIKAGSYRSRIAPDARTATIDVGDMYAEEERDFLVLLEI 446

Query: 891 PSCDLNLQEGDIMNLV 906
           P CD    E + ++L+
Sbjct: 447 PCCDNGSGESESLSLL 462


>At1g65985.1 68414.m07487 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 456

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 646 FLDAISYFPLVYWMLGTIDWSITELSQSSNM--RFMQFRAHDKYALHLSKMEKR 697
           + +++ Y P   + L  + WSITEL  + N+    + F+++D   L LSK +++
Sbjct: 217 YKESLDYIPPREYSLNRVKWSITELRNAENLSNAGVNFKSYD--YLDLSKQDEK 268


>At1g51500.1 68414.m05796 ABC transporter family protein similar to
            GB:AAF61569 from [Bombyx mori]
          Length = 687

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 1004 IKLGLSSIGLRITPPEETPRMALEPFQDIAAALPSTSGGST 1044
            ++L  +S G R  PP E  R A   ++D+   +P+ SGG T
Sbjct: 1    MELESTSNGRRPPPPAEIGRGAYLAWEDLTVVIPNFSGGPT 41


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,236,533
Number of Sequences: 28952
Number of extensions: 1015089
Number of successful extensions: 2037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 6
length of query: 1061
length of database: 12,070,560
effective HSP length: 89
effective length of query: 972
effective length of database: 9,493,832
effective search space: 9228004704
effective search space used: 9228004704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)