Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)         144   5e-35
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            31   1.0  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   4.1  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   5.4  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1)                    28   9.4  
SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)       28   9.4  
SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
          Length = 142

 Score =  144 bits (350), Expect = 5e-35
 Identities = 63/91 (69%), Positives = 72/91 (79%)

Query: 181 SIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEGGGCRFIRYNCSVRNTKKGW 240
           +IMNFVV+Y P  Q  LRPHHDSSTYTIN+ LN P + Y GGG RFIR +C+V +T+ GW
Sbjct: 52  AIMNFVVKYTPSGQYYLRPHHDSSTYTINIGLNKPGIHYGGGGSRFIRQDCAVTDTQVGW 111

Query: 241 LLMHPGRLTHYHEGLLVTKGTRYIMISFVDP 271
            LMHPGRLTHYHEGL  T GTRYIM+ FVDP
Sbjct: 112 ALMHPGRLTHYHEGLPTTWGTRYIMVCFVDP 142


>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 7   PKAKAVTYVQEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLF 66
           PK K   Y     + D++F   LR+  IFMYV+N   FG L   +T      H D++Q+F
Sbjct: 406 PKLKHA-YSYGNLEPDLSFSKYLRDNGIFMYVTNMHYFGRLKETDTVTTNHLHNDLWQIF 464

Query: 67  ENNM 70
           +N +
Sbjct: 465 DNQI 468


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 185 FVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEGGGCRF--IRY------NCSVRNT 236
           F V Y P +   L  H+D++  T+++ L     ++ GG   F  +R        C+    
Sbjct: 100 FTVHYMPGKDTELSYHYDNAEVTLSVCLGR---EFSGGDLYFGDMRQVLLEDTQCTEVEN 156

Query: 237 KKGWLLMHPGRLTHYHEGLLVTKGTRYIMI 266
           +  + L+H G+    H  L  T+G+RY +I
Sbjct: 157 RPTYGLLHRGQ--QMHGALPTTQGSRYNLI 184


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 43  DFGHLVNPETYDITKTHPDMYQLFENNMEWTTRYLHPEY 81
           D+ ++   + + I +++P +Y    +N EW  R++ P++
Sbjct: 479 DWSYIFGDKKHKIRRSYP-LYHSIHDNFEWMKRFVDPQF 516


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 196 SLRPHHDSSTYTINLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLMHPGRLTHYHEGL 255
           S+R + +    TI +    P  + + GGC F R      N  K W L+ P R+    E +
Sbjct: 169 SMRFYKEGDLDTIPVVDQIPRPEKDNGGC-FGR-GPGRMNVTKDWYLLDPSRIVPRGESI 226

Query: 256 LVTKGTRYIM 265
            +  G R +M
Sbjct: 227 YI--GARVVM 234


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 6   APKAKAVTYVQEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQL 65
           AP+     Y + G      +CA  RE     +   E+   +L   + + IT ++P  YQL
Sbjct: 700 APRTPRRWYSKVGRQQRKRYCAYRREFLALKWAVTEKFHDYLYGRQFHVITDSNPLTYQL 759


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 11  AVTYVQEGHDSDMAFCASLR-ELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFENN 69
           A ++++    ++ AF   LR + N     S  E+       +T+    + P+MY L + +
Sbjct: 86  AYSFLKMYQKAEEAFTTGLRHDPNNAQLKSGLEEVQSNAAQQTFQNPFSSPNMYTLLQAH 145

Query: 70  MEWTTRYLHPEYLANFEEDRKH 91
            +       P+Y+A  EE RK+
Sbjct: 146 PKTRAYLQQPDYVAAIEELRKN 167


>SB_34536| Best HMM Match : DUF680 (HMM E-Value=2.1)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 62  MYQLFENNMEWTTRYLHPEYLANFEEDRKHLMPCTDVYWFPLMS-DRFCD 110
           M   FE++    +    P ++A+FE  R+ L+ C D +  P  +  R C+
Sbjct: 44  MRDFFESSPSRNSTSSEPTHVADFEVMRQRLLDCLDSFTSPPFTIQRLCE 93


>SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)
          Length = 534

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 19  HDSDMAFCASLRELNIFMYVSNEEDFGHLVNP 50
           HD  + F  S R   + +++ N+  +GHL+ P
Sbjct: 180 HDDILVFAHSARMAGVKLHIINKHIYGHLILP 211


>SB_14879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 222 GGCRFIRYNCSVRNTKKGWLLMHPGRLTH 250
           GGC  +  NC V + K   ++ HP    H
Sbjct: 415 GGCELVMKNCKVYDAKSTGVVAHPDSKLH 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,322
Number of Sequences: 59808
Number of extensions: 462450
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 11
length of query: 271
length of database: 16,821,457
effective HSP length: 81
effective length of query: 190
effective length of database: 11,977,009
effective search space: 2275631710
effective search space used: 2275631710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)