Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
(271 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66512-7|CAA91321.1| 730|Caenorhabditis elegans Hypothetical pr... 322 1e-88
M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein. 35 0.071
AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dau... 35 0.071
AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal daue... 35 0.071
AC006790-8|AAF60730.1| 294|Caenorhabditis elegans Hypothetical ... 30 2.0
Z68882-12|CAA93103.2| 204|Caenorhabditis elegans Hypothetical p... 29 3.5
U67951-2|AAB07570.2| 302|Caenorhabditis elegans Regulator of fu... 29 4.7
U67951-1|AAQ65207.1| 315|Caenorhabditis elegans Regulator of fu... 29 4.7
AY115477-1|AAM55473.1| 303|Caenorhabditis elegans zinc finger p... 29 4.7
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 28 6.2
AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical ... 28 6.2
AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical ... 28 6.2
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 28 6.2
U51998-6|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 8.2
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z66512-7|CAA91321.1| 730|Caenorhabditis elegans Hypothetical
protein F52H3.1 protein.
Length = 730
Score = 322 bits (792), Expect = 1e-88
Identities = 145/256 (56%), Positives = 181/256 (70%), Gaps = 4/256 (1%)
Query: 20 DSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKT----HPDMYQLFENNMEWTTR 75
D DM+ C R+ F+Y+ NE+ +G L+ + Y T T HP+M+Q+FEN W R
Sbjct: 475 DPDMSMCKFARDNGHFLYIDNEKYYGFLIVSDEYAETVTEGKWHPEMWQIFENRELWEAR 534
Query: 76 YLHPEYLANFEEDRKHLMPCTDVYWFPLMSDRFCDEWIAIMEAYGKWSDGTNNDKRLESG 135
Y+HP Y E + C DVY FPLMS+RFC+E I ME +G+WSDG+NNDKRL G
Sbjct: 535 YIHPGYHKIMEPEHVVDQACPDVYDFPLMSERFCEELIEEMEGFGRWSDGSNNDKRLAGG 594
Query: 136 YEAVPTRDIHMSQVGLERHWLQILKDYVRPLQELVFTGYYHNPPASIMNFVVRYRPDEQP 195
YE VPTRDIHM+QVG ER WL + YVRP+QE F GYYH P S M FVVRY+P+EQP
Sbjct: 595 YENVPTRDIHMNQVGFERQWLYFMDTYVRPVQEKTFIGYYHQPVESNMMFVVRYKPEEQP 654
Query: 196 SLRPHHDSSTYTINLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLMHPGRLTHYHEGL 255
SLRPHHD+ST++I++ALN DYEGGG R+IRYNC+V + G+ +M PGRLTH HEGL
Sbjct: 655 SLRPHHDASTFSIDIALNKKGRDYEGGGVRYIRYNCTVPADEVGYAMMFPGRLTHLHEGL 714
Query: 256 LVTKGTRYIMISFVDP 271
TKGTRYIM+SF++P
Sbjct: 715 ATTKGTRYIMVSFINP 730
>M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein.
Length = 669
Score = 34.7 bits (76), Expect = 0.071
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 67 ENNMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA--- 118
EN T RYL PE L + + C DVY F L M + C D + EA
Sbjct: 460 ENYKCGTVRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATV 519
Query: 119 --YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGY 174
Y +W+D D ++ ++ V TR + ++ L W KD+ ++ + E++ T +
Sbjct: 520 IPYIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCW 569
Query: 175 YHNPPASIMNFVVRYRPDEQPSL 197
NP A +++ R R DE+ L
Sbjct: 570 NGNPSARFTSYICRKRMDERQQL 592
>AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform b protein.
Length = 668
Score = 34.7 bits (76), Expect = 0.071
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 69 NMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA----- 118
N + TRYL PE L + + C DVY F L M + C D + EA
Sbjct: 461 NYKCGTRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATVIP 520
Query: 119 YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGYYH 176
Y +W+D D ++ ++ V TR + ++ L W KD+ ++ + E++ T +
Sbjct: 521 YIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCWNG 570
Query: 177 NPPASIMNFVVRYRPDEQPSL 197
NP A +++ R R DE+ L
Sbjct: 571 NPSARFTSYICRKRMDERQQL 591
>AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform a protein.
Length = 669
Score = 34.7 bits (76), Expect = 0.071
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 67 ENNMEWTTRYLHPEYL-ANFEEDRKHLMPCTDVYWFPL-MSDRFC---DEWIAIMEA--- 118
EN T RYL PE L + + C DVY F L M + C D + EA
Sbjct: 460 ENYKCGTVRYLAPEILNSTMQFTVFESYQCADVYSFSLVMWETLCRCEDGDVLPREAATV 519
Query: 119 --YGKWSDGTNNDKRLESGYEAVPTRDIHMSQVGLERHWLQILKDY--VRPLQELVFTGY 174
Y +W+D D ++ ++ V TR + ++ L W KD+ ++ + E++ T +
Sbjct: 520 IPYIEWTDRDPQDAQM---FDVVCTRRLRPTENPL---W----KDHPEMKHIMEIIKTCW 569
Query: 175 YHNPPASIMNFVVRYRPDEQPSL 197
NP A +++ R R DE+ L
Sbjct: 570 NGNPSARFTSYICRKRMDERQQL 592
>AC006790-8|AAF60730.1| 294|Caenorhabditis elegans Hypothetical
protein Y49F6B.3 protein.
Length = 294
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 201 HDSSTYTIN--LALNTPNVDYEGGGCRFIRYNCSVRNTKKG 239
HD STYT+N L +N+PN+ G + N +++ KG
Sbjct: 167 HDDSTYTLNDVLVMNSPNILISLGTLSDVELNLYLKHFIKG 207
>Z68882-12|CAA93103.2| 204|Caenorhabditis elegans Hypothetical
protein C47E12.9 protein.
Length = 204
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 54 DITKTHPDMYQLFENNMEWTTRYLHP-EYLANFEEDRKHLMPCTDVYWFPLMSDRFC 109
D H Y L + +W + N E+ RK +M D W P+M+ FC
Sbjct: 24 DQVMVHTFEYILHDYAKQWIVELTYEFNEQNNLEDSRKTVMKAIDQNWAPVMAIPFC 80
>U67951-2|AAB07570.2| 302|Caenorhabditis elegans Regulator of
fusion protein 2,isoform a protein.
Length = 302
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
G + P+S+ + +++ L P HD S+ + N ++ TP D
Sbjct: 205 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 250
>U67951-1|AAQ65207.1| 315|Caenorhabditis elegans Regulator of
fusion protein 2,isoform b protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
G + P+S+ + +++ L P HD S+ + N ++ TP D
Sbjct: 218 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 263
>AY115477-1|AAM55473.1| 303|Caenorhabditis elegans zinc finger
protein REF-2 protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 173 GYYHNPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVD 218
G + P+S+ + +++ L P HD S+ + N ++ TP D
Sbjct: 206 GKTYTHPSSLRKHTKVHENEKKSQLSPEHDESSDSGNASIGTPTTD 251
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 209 NLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLM--HPGRLTHYH 252
N L P+++ G G F N+K GWLL+ H R T +
Sbjct: 38 NTFLPIPSINQTGKGFGFFNDKTYTYNSKSGWLLLAGHKNRSTRVY 83
>AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical
protein Y116A8A.4 protein.
Length = 441
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 209 NLALNTPNVDYEGGGCRFIRYNCSVRNTKKGWLLM--HPGRLTHYH 252
N L P+++ G G F N+K GWLL+ H R T +
Sbjct: 38 NTFLPIPSINQTGKGFGFFNDKTYTYNSKSGWLLLAGHKNRSTRVY 83
>AF016441-2|AAB65912.2| 417|Caenorhabditis elegans Hypothetical
protein M03F8.5 protein.
Length = 417
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 27 ASLRELNIFMYVSNEEDFGHLVNPETYD--ITKTHPDMYQLFENNMEWTTRYLHPEYLAN 84
+++ L IF E + L++ ET D I K P L + ++W + L PEY+
Sbjct: 245 SAVNMLPIFANELQETESMSLID-ETGDVNINKILPSKTPLNPDTIQWIWKQLPPEYITM 303
Query: 85 FEEDRKH 91
+ +D H
Sbjct: 304 YNDDIMH 310
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 11 AVTYV--QEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFEN 68
AV Y+ ++ SD S + F S E ++ +PE D+ K H +M N
Sbjct: 915 AVKYICDRDRRYSDFRRNESTFDFMKFFKTSYENKVANMQSPEVSDLVKKH-EMDLRVAN 973
Query: 69 NMEWTTRYLHPEYLANFEEDRKH--LMPCTDVYWFPLMSDRFCD 110
+ TR + Y F ++ H + C D F LM C+
Sbjct: 974 PLIEKTRVILKGYKKQFNDNFLHANYVTCPDGMRFILMQSPQCE 1017
>U51998-6|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 177 NPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEG 221
N A F + YRPD + + P + + T + N A+ P + + G
Sbjct: 50 NQNAQDCKFTLTYRPDYRKATSPENITVTVSANSAVEVPVLSWYG 94
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 177 NPPASIMNFVVRYRPDEQPSLRPHHDSSTYTINLALNTPNVDYEG 221
N A F + YRPD + + P + + T + N A+ P + + G
Sbjct: 50 NQNAQDCKFTLTYRPDYRKATSPENITVTVSANSAVEVPVLSWYG 94
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.138 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,760,599
Number of Sequences: 27539
Number of extensions: 353958
Number of successful extensions: 609
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 15
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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