Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000704-TA|BGIBMGA000704-PA|IPR005123|2OG-Fe(II)
oxygenase, IPR001006|Procollagen-lysine 5-dioxygenase,
IPR006620|Prolyl 4-hydroxylase, alpha subunit
         (271 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)

Query: 99  YWFPLMSDRFCDEWIA 114
           YW  +   RFCD WIA
Sbjct: 90  YW--VFGPRFCDTWIA 103


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 57 KTHPDMYQLFENNMEWTTRYLH 78
          K+H ++YQ    N  + T+Y H
Sbjct: 37 KSHSNVYQYRCANCTYATKYCH 58


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 32  LNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFENNME 71
           L IF+Y   E+        E  D+ +T+P    LF +++E
Sbjct: 150 LPIFLYALGEQPLTEQNLEELRDLKETYPFNPVLFISSLE 189


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 32  LNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLFENNME 71
           L IF+Y   E+        E  D+ +T+P    LF +++E
Sbjct: 188 LPIFLYALGEQPLTEQNLEELRDLKETYPFNPVLFISSLE 227


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 166 LQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHHDSS 204
           +QE +    Y  PP S   F+       +PSL P   S+
Sbjct: 368 IQEQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPRFGST 406


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 166 LQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHHDSS 204
           +QE +    Y  PP S   F+       +PSL P   S+
Sbjct: 368 IQEQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPRFGST 406


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 166 LQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHHDSS 204
           +QE +    Y  PP S   F+       +PSL P   S+
Sbjct: 368 IQEQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPRFGST 406


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 166 LQELVFTGYYHNPPASIMNFVVRYRPDEQPSLRPHHDSS 204
           +QE +    Y  PP S   F+       +PSL P   S+
Sbjct: 357 IQEQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPRFGST 395


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 16  QEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKT 58
           +E +D    +  + R+   +MY   +    HL++ E  D   T
Sbjct: 319 EEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDFQTT 361


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 192 DEQPSLRPHHDSST 205
           D+QP L P  DSS+
Sbjct: 438 DDQPPLSPQSDSSS 451


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,349
Number of Sequences: 429
Number of extensions: 4634
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 271
length of database: 140,377
effective HSP length: 57
effective length of query: 214
effective length of database: 115,924
effective search space: 24807736
effective search space used: 24807736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)